Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00305 ATGGATTCCAACAACCTTAAAATCCATGAACAAATCAAAGTTGTTCCTCAATCATCATCATCAACCCAAACAACAATAACCCCTCTCACTTTCTTTGACATATTTTGGTTAAAATTCCATCCCGTAGAACGTGTTTTCTTCTACACCCTCCCAAATTCACAATCTCACCCCTCTTTTTTCTTTCAAGAAATTGTTCCAAATCTCAAATCTTCGCTCTCTTTAACCCTCCAACATTTTATCCCTTTAGCCGGTAAAATCGTTTGGCCTAATGATTCTTCAAAGCCATTCATCCAATTCAATCCCAATGAAGATGATAAGGGAGTTTCATTTCTCATTGCAGAATCTGATTTAGATTTCAATCATGTCATTGAAAATTCACCACAGGATGCTTCGTTCTCTCGTTCTTTAATACCGCTTTTAGAATCAACCGATTCTTTTGCTTCTATTATCTCAATCCAGATAACCCTTTTTCCAAAAAGTGGTTTTTCCATTGGTATAAGCACACACCATGCAGTTCTTGATGGAAAATCTACAACCATGTTTATCAAAGCATGGGCTTATCTATGCAACAAAACCATTGAAACCCTAGAAGAATCACCAACTTTGCTGCCAAAGTTAGAGCCTTTATTCAATAGGGAAATCATCAAAGATCCAAATGAACTTTCGGTTAACTTCACAAATTACTGGATTCACGTCATGACACAGAAGTTCCCAAATGAAAAAGCAAACAATTTGGAGATTCTCCCTTTTGAACCAAAACTGAAAGACTATGTCCGTGCTACGTTCAAGCTCACGCGTGAAGATTTGGATAAAATAAAGCAAAAGGTGTTATCCAAATGGGAAATATTCTATCCAAATGAATCAAAACCTCAAATGTTATCGTCTTTTGTTATCACCTGTGCTTATTTGCATGTTACTATTGCAAAAGCTATGAATGGAGTTGATAAGGAGAAAGAGAAATTTTCTTTTCTTTTCTCGGTAGATTGTAGAGCAAGGCTAGAACCACCAATACCAAATAACTATTTTGGTAATTGTGTTTGGGTGCAATTCCCGGATACTCAACCATTGGATTTTATCAAAGAAGATGGTGTTCTTTTAGTTGCTAAGTGTATTCATGAGAAAATTATGATGATAGATGAAAAGGGTGTTCTTGAAGGAGCCAAAGATTGCATTAATAAGTTTATTTCTTTGACAAGTGAAGGATATGAAGTTATGGGAGTGGCAGGGTCTAATAGATTTGGTGTTTATGAGACTGATTTTGGTTGGGGAAGGCCGGAAAAGGTGGAGATAGTGTCGATCGATAGAGGTTTAACAATTGGTTTGGCAGAGAGCAAAGATGGCAATGGTGGAATTGAAGTTGGAGTTGTTCTTAATAAAGATGTAATGGATCTCTTTAGCCATTTGTTTCTTGAAGGACTTTGA 1422 0.3643 MDSNNLKIHEQIKVVPQSSSSTQTTITPLTFFDIFWLKFHPVERVFFYTLPNSQSHPSFFFQEIVPNLKSSLSLTLQHFIPLAGKIVWPNDSSKPFIQFNPNEDDKGVSFLIAESDLDFNHVIENSPQDASFSRSLIPLLESTDSFASIISIQITLFPKSGFSIGISTHHAVLDGKSTTMFIKAWAYLCNKTIETLEESPTLLPKLEPLFNREIIKDPNELSVNFTNYWIHVMTQKFPNEKANNLEILPFEPKLKDYVRATFKLTREDLDKIKQKVLSKWEIFYPNESKPQMLSSFVITCAYLHVTIAKAMNGVDKEKEKFSFLFSVDCRARLEPPIPNNYFGNCVWVQFPDTQPLDFIKEDGVLLVAKCIHEKIMMIDEKGVLEGAKDCINKFISLTSEGYEVMGVAGSNRFGVYETDFGWGRPEKVEIVSIDRGLTIGLAESKDGNGGIEVGVVLNKDVMDLFSHLFLEGL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00305 473 FunFam Phenolic glucoside malonyltransferase 1 254 473 - -
Vifa1g00305 473 PANTHER - 6 473 - -
Vifa1g00305 473 Gene3D - 253 473 IPR023213 -
Vifa1g00305 473 Pfam Transferase family 12 467 - -
Vifa1g00305 473 Gene3D - 6 241 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00305 Vifa-Chr1 47892858 47894279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00305 21 471 Monolignol Biosynthesis Gene Families AT5G48930 25.806 4.01e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00305 - - tpra:123889238 711.064