Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00304 ATGTCTTCCAACAAAAACAACATTAAAATCCACGAACACTTCAAAGTTGTTCCTCCATCGTCAAACCAAACAACAACAACAATAACCCCTCTCACTTACTTTGATATATTTTGGCTAAGATTTCATCCAGTAGAACGTGTCTTCTTCTACACCCTCCCAAATTCACAATCACACCCCTCTTTCTTCTTCCAAAACCTTGTTCCAAATCTCAAATCTTCACTTTCTTTAACCCTCCAACACTTTCCTCCTTTAGCTGGTAAAATCGTTTGGCCTTCTGATTCTTCAAAACCATTCATCCAATTCAATCCCAATGATGATGATGATAATGGAGTTTCATTGCTCATTGCAGAATCTAGTTTAGACTTCAACCATGTCATAGAAAATTCACCACAAGAAGCTTCGTTGTCTCGTTCTCTTATACCCAATTTAGAATCAAGAGATTCTTTTGCTTCTGTTATGTCCATTCAAATAACCCTTTTTCCAAAAAATGGTTTTTCTATTGGTATCACCACACACCATGCAGTTCTTGATGGAAAATCTTCAACCATGTTCATCAAAGCATGGGCTTATCTATGCAACAAAGTCATCAAAACCGAAGAAGAATCACCAACTTTGTTACCAGAGTTAGAGCCTTTATTCAACAGAGAAATCATCAAAGACCCGAATGAAATTCGAAAAAAATTCACAGATAACATAAATGAGTTAACAACCAAGATGTTCCCAAATGAAAAACCAAACCAACGATGCTTGAAGATATTTCCTTTTGAGCCGAAACTCAAAGACTCTCTTCGCGCCACGTTCAAGCTCACACGTGAAGATTTGGATAAAATAAAGCAAAGGGTGTTATCCAAATGGGAAATATTCGATACAAATGAATCAAAACCCGAGACTCTATCATCTTTTATTCTCACTTGTGCTTATTCACTTGTTTGTATTGCAAAAGCTATTCATGAAGTGGAAAAAAAGAGAGAGAAGTTTGGTTTTGTTTTCACAGTTGATTGTAGAGCAAGGTTAGAGCCACCGATACCAAATAACTATTTTGGAAACTGTGTTTGGGGGATTATCGTTGATACACAACCATATGATTTTATAAAAGAAGATGGTGATTTTTTAGTTGCAAAATGCATGCATGAGAAAATAAAGATGATGAATAAAAATGGGTTTGATAAATTTAGTCCTATGCCAAATGAAGGAGTTGAAGTTATGGGAGTGGCGGGTTCTAATAGATTTGGTGTTTATGAGATTGATTTTGGTTGGGGGAGGCCGGAAAAAGTGGAGATAGTGTCGATTGATAGAGGTTTAACAATTGGTTTGACAAAGAGCAAAGATGACAATGGTGGAATTGAAGTTGGAGTAGTTCTTAATAAAGATGTAATGGATCACTTTAGCCATTTGTTTCTTGAAGGACTATCTAGCAATTAG 1422 0.3608 MSSNKNNIKIHEHFKVVPPSSNQTTTTITPLTYFDIFWLRFHPVERVFFYTLPNSQSHPSFFFQNLVPNLKSSLSLTLQHFPPLAGKIVWPSDSSKPFIQFNPNDDDDNGVSLLIAESSLDFNHVIENSPQEASLSRSLIPNLESRDSFASVMSIQITLFPKNGFSIGITTHHAVLDGKSSTMFIKAWAYLCNKVIKTEEESPTLLPELEPLFNREIIKDPNEIRKKFTDNINELTTKMFPNEKPNQRCLKIFPFEPKLKDSLRATFKLTREDLDKIKQRVLSKWEIFDTNESKPETLSSFILTCAYSLVCIAKAIHEVEKKREKFGFVFTVDCRARLEPPIPNNYFGNCVWGIIVDTQPYDFIKEDGDFLVAKCMHEKIKMMNKNGFDKFSPMPNEGVEVMGVAGSNRFGVYEIDFGWGRPEKVEIVSIDRGLTIGLTKSKDDNGGIEVGVVLNKDVMDHFSHLFLEGLSSN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00304 473 SUPERFAMILY CoA-dependent acyltransferases 303 467 - -
Vifa1g00304 473 PANTHER - 8 472 - -
Vifa1g00304 473 Pfam Transferase family 16 464 - -
Vifa1g00304 473 Gene3D - 259 472 IPR023213 -
Vifa1g00304 473 Gene3D - 8 243 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00304 Vifa-Chr1 47678095 47679516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00304 24 468 Monolignol Biosynthesis Gene Families AT5G48930 23.441 1.01e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00304 - - tpra:123889238 713.375