Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00303 ATGGCTTCTCTAGAAAAGCACATAAAAATCCATGAACAATGCAAAGTTTCTCTTCCATTTGAATCTCAACTATCTCTCCCTCTCACATTCTTTGATTTGTTTTGGCTAAGATTCCACCCAGTTGAACGTGTCTTCTTCTACACCCTCTCAAATTCCCAATCACACCCTTCTTTCTTCTTCCAAACAATTGTTCCAAAACTAAAATCATCACTCTCTTTAACTCTCCAACACTTCCTCCCTATAGCTGGTAAAATCGTCTGGTCTTCTGATTCTCCAAAACCATTCATCCAATTTAATCCCGTTGACGACGGAGTTTCCTTGATCATAGCACAGTGTGATGAAGATCAAGATGATATAGACTTCAAGAAACTCTTGGAGTATAATACACCTCATGAAGTGTCTTTGTCTCGTTATTTTGTACCTCACTTGGATTCAACAGATTCTTTTGCTTCAATTCTCTCCATTCAAATAACCCTTTTTCCAAAAAGTGGTTTTTCCATTGGATTAAGCAGTCACCATGCTGTTCTTGATGGAAAATCTTCAACCATGTTTATCAAAGCTTGGGCTTCAACATGTAAATCTCTTGAAGAAACACTGTCACCAAGTTTAAAGCCTTCATTGGAACCATTTTTCGGAAGGGAAGTAGTCGTCGATGCAAATGATTTTGAACGTTTGTTTATAAGTATTTGGAATGACATCTCCTCCAAACAAAGAAGCTTGCAAATTATGCCAAACTCAAAAGCATCTCAACAAAACCTCGTTCGAGCAACGTTTGAGCTCAAACGCGTAGATTTGGAGAAACTAAACAAAAGGGTGTTGTCCAAATGGAACATGGTGGAATTAGAATTAGCACAACAAAAAGAACCAAAAATGGAAACTTCAAAACCTAAGAAATTGTCAAATTTTGTTCTTACATGTGCTTATGTATTTGTCTGCATTGCAAAAGCAAATCAACAAGCAAATAGTGACAAAGAATATAAATTTGCTTGTGGTTTCAGTGCGGATTGCAGGGCTAGATTAGATCCTCCAATAGCTGAAAACTATTTTGGAAATTGTGTAAATACACATATAGTAGAAACTGAATATGAAAATTTTACACAGGAAGATGGGTTGGTAATTGTTGCTAAGAGGATTTATGATAAAATAAAAAAGATGGATGAAGGAGTTCTTGAAGGGATGGAGACATTGATTTTCAGATTATTGGCTATGAAGAGAGAAGGAATACAGACAATGGGAGTTTCTGGTTCAACAAGGCTTGGAGTTTATGAGATTGATTTTGGTTTTGGAAGGCCTGCAAAAGTGGAGATTACTTCACTTGATAGAGGATTAACAATTGGATTAGCAGAAAGTAAGGATTTGAAAGGTGGTGTTGAAGTTGGACTTGTTCTTGATAAATATGTGATGGGTGAGTTTCATTCTCTTTTTCATGAAGGACTGTGCTTTCAGGAGTAG 1452 0.3657 MASLEKHIKIHEQCKVSLPFESQLSLPLTFFDLFWLRFHPVERVFFYTLSNSQSHPSFFFQTIVPKLKSSLSLTLQHFLPIAGKIVWSSDSPKPFIQFNPVDDGVSLIIAQCDEDQDDIDFKKLLEYNTPHEVSLSRYFVPHLDSTDSFASILSIQITLFPKSGFSIGLSSHHAVLDGKSSTMFIKAWASTCKSLEETLSPSLKPSLEPFFGREVVVDANDFERLFISIWNDISSKQRSLQIMPNSKASQQNLVRATFELKRVDLEKLNKRVLSKWNMVELELAQQKEPKMETSKPKKLSNFVLTCAYVFVCIAKANQQANSDKEYKFACGFSADCRARLDPPIAENYFGNCVNTHIVETEYENFTQEDGLVIVAKRIYDKIKKMDEGVLEGMETLIFRLLAMKREGIQTMGVSGSTRLGVYEIDFGFGRPAKVEITSLDRGLTIGLAESKDLKGGVEVGLVLDKYVMGEFHSLFHEGLCFQE 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00303 483 Gene3D - 7 243 IPR023213 -
Vifa1g00303 483 Gene3D - 250 482 IPR023213 -
Vifa1g00303 483 Pfam Transferase family 15 473 - -
Vifa1g00303 483 SUPERFAMILY CoA-dependent acyltransferases 295 454 - -
Vifa1g00303 483 PANTHER - 8 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00303 Vifa-Chr1 47595158 47596609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00303 32 431 Monolignol Biosynthesis Gene Families AT5G48930 25.547 1.28e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00303 - - tpra:123889238 536.954