Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00300 ATGCATGGAAACTCCGAATTCGCTCATCTTGCACCTATTAAAGAAATCATGGCTCTTAACCCACGTGAGAAAATCTCATGCAAGCTCATTTCAAAAACCTCACTTTCACATGATGTAAGACTCTTCCGCTTCGCATTACCGTCTGAAGATCAATTACTTGGATTACCCGTCGGGAAACACGTATTCTTATGTGTTTCGGTGGACGGAAAGTTGATCATACGAGCTTATACACCGACGAGTAGCATTGATGAAATTGGATATTTTGAACTAGTTGTCAAAATCTACTTCAAAAACGTTCACCCCAAGTTTTCTAATGGTGGACTCATGTCTCAGTATTTGGACTCACTTACTATTGGATCAATAGTGGAAGTAAGAGGCCCGGTGGGCCACATTGAGTATCTTGGTAGAGGAAACATTATGGTTCATGGGAAGCAAAGGTTCGCGAAAAATCTAGTAATTTTTGCGGGTGGAATCGGAATTACGTCGATTTATCAAGTGGCGAATGGGATTTTGAAAGACGTTGATGACCGAACCGAAATGCATGTCATTTATGCGAACATGACGGGAGATGATATATTGTTGAGGGAAAAGTTGGATGAATGGATTAAGGTTTTTAGTGATAGGTTTAAGATTTGGTATGTTGTGGAAAATGCAAAGGAAGGGTGGGAATATAGTGTGGGATTCATCACGGGGAGTATCATTATGGAGCATGTTCTATTAATCGGTGAAGATACATTGGCATTGGCTTGTGAGCCACCACCTATGATTCAGTTTGATGTGCAACCTAATTTGTAG 795 0.4063 MHGNSEFAHLAPIKEIMALNPREKISCKLISKTSLSHDVRLFRFALPSEDQLLGLPVGKHVFLCVSVDGKLIIRAYTPTSSIDEIGYFELVVKIYFKNVHPKFSNGGLMSQYLDSLTIGSIVEVRGPVGHIEYLGRGNIMVHGKQRFAKNLVIFAGGIGITSIYQVANGILKDVDDRTEMHVIYANMTGDDILLREKLDEWIKVFSDRFKIWYVVENAKEGWEYSVGFITGSIIMEHVLLIGEDTLALACEPPPMIQFDVQPNL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00300 264 PRINTS Cytochrome B5 reductase signature 152 171 - -
Vifa1g00300 264 PRINTS Cytochrome B5 reductase signature 246 254 - -
Vifa1g00300 264 PRINTS Cytochrome B5 reductase signature 190 201 - -
Vifa1g00300 264 PRINTS Cytochrome B5 reductase signature 53 64 - -
Vifa1g00300 264 PRINTS Cytochrome B5 reductase signature 74 81 - -
Vifa1g00300 264 PRINTS Cytochrome B5 reductase signature 119 133 - -
Vifa1g00300 264 FunFam NADH-cytochrome b5 reductase 13 128 - -
Vifa1g00300 264 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 121 259 IPR039261 -
Vifa1g00300 264 CDD cyt_b5_reduct_like 27 264 - -
Vifa1g00300 264 SUPERFAMILY Riboflavin synthase domain-like 15 134 IPR017938 -
Vifa1g00300 264 Gene3D - 129 264 IPR039261 -
Vifa1g00300 264 Pfam Oxidoreductase FAD-binding domain 27 133 IPR008333 -
Vifa1g00300 264 Gene3D Translation factors 14 128 - -
Vifa1g00300 264 Pfam Oxidoreductase NAD-binding domain 155 258 IPR001433 GO:0016491
Vifa1g00300 264 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 22 134 IPR017927 GO:0016491
Vifa1g00300 264 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 74 81 IPR001709 GO:0016491
Vifa1g00300 264 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 152 171 IPR001709 GO:0016491
Vifa1g00300 264 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 190 201 IPR001709 GO:0016491
Vifa1g00300 264 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 178 187 IPR001709 GO:0016491
Vifa1g00300 264 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 106 115 IPR001709 GO:0016491
Vifa1g00300 264 PANTHER NADH-CYTOCHROME B5 REDUCTASE 14 264 IPR001834 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00300 Vifa-Chr1 47466625 47467419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00300 14 255 NADPH P450 reductases AT5G17770 36.885 2.71e-49 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00300 K10534 - gmx:100813471 410.609