Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00298 ATGCATGGAAACTCCGAATTCGCTCATCTTGCACCTATTAAAGAAATCATGGCTCTTAACCCACGTGAGAAAATCCCATGCAAGCTCATTTCAAAAACCTCACTTTCACATGATGTAAGACTCTTCCGCTTTGCATTACCGTCTGAAGATCAATTACTTGGATTACCCGTCAGGAAACACGTATTCTTATGTGTTTCGGTGGACGAAAAGTTGATCATGCAAGCTTATACACCGACGAGTAGCATTGATGAAATTGGATATTTTGAACTAGTTGTCAAAATCTACTTCAAAAACGTTCACCCCAACTTTTCTAATGGTCGACTCATGTCTCAGTATTTGGACTCACTTACTATTGGGTCAATAGTGGAAGTAAAAGGCCCGGTAGGCCACATTGAGTATCTTGGTAGAGGAAACATTATGGTTCATGGGAAGCAAAGGTTCACGAAAAATCTAGTAAATTTTGCGGGTGGAACCGGAATTACGTCGGTTTATCAAGTGGCGAATGCGATTTTGAAAGACGCTAATGACCGAACTGAAATGCATGTCGTTTATGCGAACATGACGGAGGATGATATATTATTGAGGGAAAAGTTGGATGAATGGATTAAGGTTTATAGTGATAGGTTTAAGATTTGGTATGTTGTGGAAAATGCAAAGGAAGGGTGGGAATATAGTGTGAGATTCATCACGAGGAGTATCATTAGGGAGCATGTTCCATTAACTGATGGGGGGTATGATATTAAGAAGGATTTGCTTGTGTTTTAG 765 0.3987 MHGNSEFAHLAPIKEIMALNPREKIPCKLISKTSLSHDVRLFRFALPSEDQLLGLPVRKHVFLCVSVDEKLIMQAYTPTSSIDEIGYFELVVKIYFKNVHPNFSNGRLMSQYLDSLTIGSIVEVKGPVGHIEYLGRGNIMVHGKQRFTKNLVNFAGGTGITSVYQVANAILKDANDRTEMHVVYANMTEDDILLREKLDEWIKVYSDRFKIWYVVENAKEGWEYSVRFITRSIIREHVPLTDGGYDIKKDLLVF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00298 254 Gene3D Translation factors 14 128 - -
Vifa1g00298 254 Pfam Oxidoreductase FAD-binding domain 27 133 IPR008333 -
Vifa1g00298 254 Pfam Oxidoreductase NAD-binding domain 155 245 IPR001433 GO:0016491
Vifa1g00298 254 SUPERFAMILY Riboflavin synthase domain-like 15 134 IPR017938 -
Vifa1g00298 254 PRINTS Cytochrome B5 reductase signature 74 81 - -
Vifa1g00298 254 PRINTS Cytochrome B5 reductase signature 53 64 - -
Vifa1g00298 254 PRINTS Cytochrome B5 reductase signature 190 201 - -
Vifa1g00298 254 PRINTS Cytochrome B5 reductase signature 119 133 - -
Vifa1g00298 254 PRINTS Cytochrome B5 reductase signature 152 171 - -
Vifa1g00298 254 CDD cyt_b5_reduct_like 27 244 - -
Vifa1g00298 254 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 121 246 IPR039261 -
Vifa1g00298 254 PANTHER NADH-CYTOCHROME B5 REDUCTASE 14 241 IPR001834 GO:0016491
Vifa1g00298 254 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 22 134 IPR017927 GO:0016491
Vifa1g00298 254 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 190 201 IPR001709 GO:0016491
Vifa1g00298 254 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 222 238 IPR001709 GO:0016491
Vifa1g00298 254 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 178 187 IPR001709 GO:0016491
Vifa1g00298 254 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 74 81 IPR001709 GO:0016491
Vifa1g00298 254 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 152 171 IPR001709 GO:0016491
Vifa1g00298 254 Gene3D - 129 253 IPR039261 -
Vifa1g00298 254 FunFam NADH-cytochrome b5 reductase 13 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00298 Vifa-Chr1 47447055 47447893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00298 14 239 NADPH P450 reductases AT5G17770 36.404 1.75e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00298 K10534 - gmx:100813471 385.185