Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00288 ATGGCTGAAGAGGAATCTGTGAAAATGATTCGGGAGTTAGAAAGAGAGGAGGATTTGATTGCTGCAGCTAGGCATATTGTGGAAGCTTTAGGTTCGAATAAGAATCTTACTAGCGATACTAAGAAGATTTTGGCGGATCTTGGATCGCGGTTGTCTTCGATGAACATTGAGAATGAGAAGGAGGAGAGGATGATAGGGAAAAACGAGAGTGATATCGATGACGAAGAGGCGGTGAATGAGGGGGAGGAGGAGGAAGAGGGTGTTGGTGTTATTGAAAAACGAATTGGTTTGATTCAGGAGAAGATAATGAAATGGGAGGAAGATGAGTCAATGATTTGGGATTCGGGACCTGAGGAAGCGTCTGAGTATTTGAACGCGGCTAATGAAGCGCGGATATTGATTGAGAAGTTGGAGAGTATGCATTTGAGTAAAGAGGATCAAGAGTATAAGTTTTTGCAAAGGGCTCATAGTGTTCTTCAGACGGCTATGACGCGGCTTGAAGAAGAGTTTAGCCATTTGCTTATCCAGAATAGGCAACCTTTTGAGCCTGAGTATGTCTCTTTTCGGTCAAGCGAGGAAGATGCTGCTGATGGGAATTCGTTTGTCTCTTTAGGTGATGATTCGTTTGAGGAATCACTTCGAAGAGATAGTGTTAGTCGAGCCGCTGAAGAGCATGTCATTGATTTAGTTCATCCGGACGTAATCCCCGATCTGAGGTGTATTGCGAGTTTGCTTTTTGCTTCGAATTATGCGAAGGAATGTTCGCAAGTTTATACCATCGTTCGGAGAGATGCTTTGGATGAGTGTTTGTTCATTCTTGAAATGGAAAGGCTTAGTATCGAAGATGTGTTGAAAATGGAATGGAATACTTTGAATTCGAAGATCAAACGATGGATTTGGGCTGTGAAAATCTTTGTTCGGGTTTATCTTGCGAGTGAAAGGTGGCTTAGCGACCAGATTTTCGGAGAAGGCGAGCCTGCGAGCCAAGTTTCTTTTGTCGATGCATCGAAAGCTTCAATTTTGCAGCTTCTGAATTTCGGCGAAGCAATGTCTATTGGTCCTCACAAGCCCGAAAAATTGTTTCGAATTCTCAACATGTATGAAGTTCTTGCTGGCCTTATGCCAGACATCGATGCTTTGTATCCGGACGAGGCCGGCTCCTCGGTTAAATTTGAATGTCACGAGGTTCTAGACAGATTGGGAGATTGCGTGAGGATAACTTTTCTCGAATTCAAAAGTGTGGTTGATTCGAATCCGTCAGTAACACCTTTAGTTGGTGGCGGAATACATCCTTTGGCGAGGTACGTTATGAATTATCTTCGGACTCTTGCCGATTACGGCGAAGCGCTGAATCATCTTCTCAAAGACCAAGAAGAAGAGGATGCCATTTCGTCGTCACCCGACACAAGTCCAGGTACCGAAGAAGACAACAAAAGCCATGAATCTCCCGGTAGATTTCCATCGATGGCGCGACAATTCTTATCGTTCGCCTCCGTCTTGGAAAACAATCTCGAGGAGAAATCAAAATCATACAAAGAAACCTCATTGCAGCACTTGTTCTTAATGAACAACCTTCATTACATGGCTGAAAAGGTCAAAGGATCTGAACTTCGGATCATATTCGGCGACGAATGGATTCGAAAACACAACTGGAAGTTTCAGCAGCACGCGATGAAATACGAGAGAGCCTCTTGGAGTTCAATTCTCAGCTTACTTAAAGACGAAGGAATCCACGCGCCCGGTTCAAATTCCGTCTCGAAAACTCTTCTAAAAGAGAAGCTACGAAGCTTCTACCTCGGTTTCGAAGACATTTACAGAATCCAAACAGGTTGGTCAATTCCGGATGTTCAGCTTCGCGAAGACTTGCGGATTTCGATATCTCAAAACTTGATTCAAGCTTACAGGACATTTGTTGGAAGGCATAATAGTCACATTAGTGACAGGAATATTAGATACACTGCTGATGATTTAGAGAATTATCTTTTGGATTTCTTTGAAAATTCTCAGAAGTTGTTGCAAAATCCTCTTAGGAGGTGA 2037 0.432 MAEEESVKMIRELEREEDLIAAARHIVEALGSNKNLTSDTKKILADLGSRLSSMNIENEKEERMIGKNESDIDDEEAVNEGEEEEEGVGVIEKRIGLIQEKIMKWEEDESMIWDSGPEEASEYLNAANEARILIEKLESMHLSKEDQEYKFLQRAHSVLQTAMTRLEEEFSHLLIQNRQPFEPEYVSFRSSEEDAADGNSFVSLGDDSFEESLRRDSVSRAAEEHVIDLVHPDVIPDLRCIASLLFASNYAKECSQVYTIVRRDALDECLFILEMERLSIEDVLKMEWNTLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPASQVSFVDASKASILQLLNFGEAMSIGPHKPEKLFRILNMYEVLAGLMPDIDALYPDEAGSSVKFECHEVLDRLGDCVRITFLEFKSVVDSNPSVTPLVGGGIHPLARYVMNYLRTLADYGEALNHLLKDQEEEDAISSSPDTSPGTEEDNKSHESPGRFPSMARQFLSFASVLENNLEEKSKSYKETSLQHLFLMNNLHYMAEKVKGSELRIIFGDEWIRKHNWKFQQHAMKYERASWSSILSLLKDEGIHAPGSNSVSKTLLKEKLRSFYLGFEDIYRIQTGWSIPDVQLREDLRISISQNLIQAYRTFVGRHNSHISDRNIRYTADDLENYLLDFFENSQKLLQNPLRR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00288 678 Pfam Exo70 exocyst complex subunit 296 662 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa1g00288 678 Coils Coil 149 169 - -
Vifa1g00288 678 Gene3D Exocyst complex component Exo70 100 673 - -
Vifa1g00288 678 MobiDBLite consensus disorder prediction 65 85 - -
Vifa1g00288 678 SUPERFAMILY Cullin repeat-like 107 666 IPR016159 -
Vifa1g00288 678 Coils Coil 120 140 - -
Vifa1g00288 678 MobiDBLite consensus disorder prediction 457 485 - -
Vifa1g00288 678 PANTHER EXOCYST COMPLEX PROTEIN EXO70 89 666 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00288 Vifa-Chr1 44547488 44549524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00288 12 678 EXO70 exocyst subunit family AT3G29400 47.941 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00288 K07195 - gmx:100799102 1049.27