Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00287 ATGGCGTTCTTTGGTAAAATTGGGAAGTTACTGAAGAGCTCTGCTGTCAAGCACATCAATCATGATATTTCCATGTCTACTCCTTTGGCATTCCAAGCGATTAGATCTATGTCATCTGCAAAGCTTTTTGTTGGAGGAATTTCATATAGCACTGATGATACCAGTCTCCGAGAACATTTTGCTCGCTATGGGGAAGTTGTTGATGCAAAGGTTATTATGGATCGTGAAACAGGAAGGTCCCGAGGTTTTGGCTTCATAACTTTTACAACAAGCGAGGATGCATCTGCTGCCCTTCAAGCCATGGATGGCCAGGATCTTCATGGTCGGACAGTACGAGTGAACTATGCTACAGAAAGGTCACGTCCTGGGTTTGGTGGTGGAGGCGGCTATGGTGGAGGTGGAGGTGGAGGCTATGGTGGAGGTGGTGGATATGGCGGCGGCGGTGGTGGCGGATATGGTAGTGGTGGATTTGGCGGTGGCAGCTATGGTGGTAGTACTTATGGTCGTAACGATAATAGCAACAGTGGAAGCTATGGAAGTGGTGGTTATGGTGCCCCGGGAAGCTATGGTGGTAGCAATGTCGAGACTAGTTACGCTGCCCCTGTTGAACACGGAAGCAACTCTAATTTGGGGTATGATGGTCAACTTGGTAGCCACCAAGATGGCGGTGAATTCGTTGAACCACGTGAAAACAACCCTGATGAACCTAATGATTACATAGAGACCGGGAGGAGGTGA 738 0.4851 MAFFGKIGKLLKSSAVKHINHDISMSTPLAFQAIRSMSSAKLFVGGISYSTDDTSLREHFARYGEVVDAKVIMDRETGRSRGFGFITFTTSEDASAALQAMDGQDLHGRTVRVNYATERSRPGFGGGGGYGGGGGGGYGGGGGYGGGGGGGYGSGGFGGGSYGGSTYGRNDNSNSGSYGSGGYGAPGSYGGSNVETSYAAPVEHGSNSNLGYDGQLGSHQDGGEFVEPRENNPDEPNDYIETGRR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00287 245 MobiDBLite consensus disorder prediction 223 245 - -
Vifa1g00287 245 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 138 - -
Vifa1g00287 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vifa1g00287 245 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vifa1g00287 245 SUPERFAMILY RNA-binding domain, RBD 23 150 IPR035979 GO:0003676
Vifa1g00287 245 MobiDBLite consensus disorder prediction 199 245 - -
Vifa1g00287 245 PRINTS Eggshell protein signature 180 198 - -
Vifa1g00287 245 PRINTS Eggshell protein signature 36 52 - -
Vifa1g00287 245 PRINTS Eggshell protein signature 125 140 - -
Vifa1g00287 245 PRINTS Eggshell protein signature 152 162 - -
Vifa1g00287 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vifa1g00287 245 MobiDBLite consensus disorder prediction 199 215 - -
Vifa1g00287 245 CDD RRM2_NsCP33_like 41 116 - -
Vifa1g00287 245 Gene3D - 32 156 IPR012677 -
Vifa1g00287 245 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 32 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00287 Vifa-Chr1 44506787 44509053 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00287 31 212 Eukaryotic Initiation Factors Gene Family AT3G16380 29.570 1.25e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00287 K12741 - gmx:100818300 224.942