Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00279 ATGCTCCTTGTACAAGCAATGTCTAGTGGTATTGACTTAACTTGGCAAGATGCTCGTGCAACCTTCTATGGTGATGCATCTGGTGCTGACACAATGCAGGGGGCTTGTGGCTATGGTGATCTCTTCAAACAAGGGTATGGACTTGCAACTACAGCACTAAGCACTGCTCTAATTAATAATGGACTTGCTTGTGGTGCATGTTTTCAGATAACATGTGTTAATGACCCTCAGTGGTGCATAATGGGTGCAAAACCAATAACAGTGACAGCAACAAATCTTTGTCCTCCAGATTATTCCAAAACCACAGACATTTGGTGTAACCCTCCACAAAAACACTTTGATTTAAGTTATAAAATGTTCACATCTATTGCTCATTATAAAGCTGGTGTCATCCTGTTAAATATCGACGTGTTCCATGCATAA 423 0.4066 MLLVQAMSSGIDLTWQDARATFYGDASGADTMQGACGYGDLFKQGYGLATTALSTALINNGLACGACFQITCVNDPQWCIMGAKPITVTATNLCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAHYKAGVILLNIDVFHA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00279 140 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 33 131 IPR007112 -
Vifa1g00279 140 PRINTS Expansin/Lol pI family signature 14 29 IPR007118 GO:0005576
Vifa1g00279 140 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Vifa1g00279 140 PRINTS Expansin/Lol pI family signature 32 50 IPR007118 GO:0005576
Vifa1g00279 140 PRINTS Expansin signature 45 59 IPR002963 GO:0009664
Vifa1g00279 140 PRINTS Expansin signature 86 96 IPR002963 GO:0009664
Vifa1g00279 140 PRINTS Expansin signature 103 120 IPR002963 GO:0009664
Vifa1g00279 140 PRINTS Expansin signature 72 83 IPR002963 GO:0009664
Vifa1g00279 140 PRINTS Expansin signature 120 133 IPR002963 GO:0009664
Vifa1g00279 140 Pfam Lytic transglycolase 50 131 IPR009009 -
Vifa1g00279 140 PANTHER EXPANSIN-A15 13 133 IPR002963 GO:0009664
Vifa1g00279 140 CDD DPBB_EXPA_N 15 131 - -
Vifa1g00279 140 SMART dpbb_1 50 135 IPR007112 -
Vifa1g00279 140 SUPERFAMILY Barwin-like endoglucanases 9 131 IPR036908 -
Vifa1g00279 140 Gene3D - 4 135 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00279 Vifa-Chr1 43069998 43070517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00279 9 131 Expansin Gene Family AT5G39280 70.732 2.10e-63 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00279 - - zju:107415875 211.46