Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00278 ATGGTTGTGTCTCACTCTTTGGTTCCTTTGTTCTTTTTCACGATGCTCCTTGTACAAGCAATGTCTAGTGGCATTGACTTAACTTGGCAAGACGCTCGTGCAACCTTCTATGGTGATGCATCTGGTGCTGACACCATGCGGGCTTGTGGCTATGGTGATCTCTTCAAACAAGGATATGGACTTGCGACCACAGCACTAAGCACTGCTCTAATTAATAATGGATTTACTTGTGGTGCATGTTTTCAGATAACATGTGTTAATGACCCTCAGTGGTGCATAATGGGTGCAAAACCAATAACAGTGACAGCAACAAATCTTTGTCCTCCAGATTATTCCAAAACCACAGACATTTGGTGTAACCCTCCACAAAAACACTTTGATTTAAGTTATAAAATGTTCACATCTATTGCTCATTATAAAGCTGGTGTCATTCCTGTTAAATATCGACGTGTTCCATGCATAAAAAAAGGAGGTGTTAGGTTTGAACTAAAAGGAAACCCTTATTTTTTGTTGGTTTTGGTTTACAATGTCGCTAATGCTGGTGATGTTACTAATGTGAGTATTCAAGGATCTAAAACTGGTTGGATTACCATGTCACACAACTGGGGACAAAATTGGGGTGTCAATATAAATTTGGTAGGGCAAAGCTTGTCATTCCGTGTTACAACAAGTAGTGGAGAAAGTTTAGGCCTTCCACATGTCGCCCCTTCAAATTGGCAATTTGGACAGACTTATAAGACCAAGCAAAATTTTTAA 756 0.3968 MVVSHSLVPLFFFTMLLVQAMSSGIDLTWQDARATFYGDASGADTMRACGYGDLFKQGYGLATTALSTALINNGFTCGACFQITCVNDPQWCIMGAKPITVTATNLCPPDYSKTTDIWCNPPQKHFDLSYKMFTSIAHYKAGVIPVKYRRVPCIKKGGVRFELKGNPYFLLVLVYNVANAGDVTNVSIQGSKTGWITMSHNWGQNWGVNINLVGQSLSFRVTTSSGESLGLPHVAPSNWQFGQTYKTKQNF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00278 251 Pfam Lytic transglycolase 63 148 IPR009009 -
Vifa1g00278 251 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664
Vifa1g00278 251 SMART dpbb_1 63 148 IPR007112 -
Vifa1g00278 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Vifa1g00278 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Vifa1g00278 251 SUPERFAMILY Barwin-like endoglucanases 28 176 IPR036908 -
Vifa1g00278 251 Gene3D - 157 251 IPR036749 -
Vifa1g00278 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 158 IPR007112 -
Vifa1g00278 251 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
Vifa1g00278 251 Gene3D - 18 153 IPR036908 -
Vifa1g00278 251 CDD DPBB_EXPA_N 29 153 - -
Vifa1g00278 251 PANTHER EXPANSIN-A15 13 249 IPR002963 GO:0009664
Vifa1g00278 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576
Vifa1g00278 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Vifa1g00278 251 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vifa1g00278 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576
Vifa1g00278 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00278 Vifa-Chr1 42948388 42949238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00278 23 251 Expansin Gene Family AT5G39280 64.783 4.26e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00278 - - tpra:123886237 350.903