Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00277 ATGGTTGTGTCTCACTCTTTGGTTCCTTTGTTCTTTTTCATGATGCTCCTTGTACAAGTAATATCTAGAGGCATTGACTTAACTTGGCAAGATGCTCGTGCAACCTTCTACGGTGATGCATCTGGTGCTGACACAATGCAGGGGGCTTGTGGCTATGGTGATCTCTTCAAACAAGGATATGGTCTTGCAACTACAGCACTAAGCAGTGCTCTATTCAATGAAGGATTAACTTGCGGTGCATGTTTTCAAATAATGTGTGTTAATGACCCTCAATGGTGCATAAAGGGTGCAAAACCAATCATAGTGACAGCAACAAATTTGTGTCCTCCAAATTATACCAAAACCGGTGTTAGGTTTGAACTAAAAGGAAACCCTTATTTTTTGATGGTTTTGGTTTACAATGTTGCTAATGCTGGTGATGTTACTAATGTGAGTATTCAAGGATCTAAGACTGGTTGGATTACCATGTCACACAACTGGGGACAAAACTGGGATGTCAATATGAATTTGGTAGGGCAAAGCTTGTCATTTCTTGTCACTACAAGCAGTGGGAAAATTTTAGGCTTTCCACATGTCGCTCCTACAAATTGGCAATTTGGACAAACTTACGAGGGCAAGCAAAATTTTTAA 630 0.4016 MVVSHSLVPLFFFMMLLVQVISRGIDLTWQDARATFYGDASGADTMQGACGYGDLFKQGYGLATTALSSALFNEGLTCGACFQIMCVNDPQWCIKGAKPIIVTATNLCPPNYTKTGVRFELKGNPYFLMVLVYNVANAGDVTNVSIQGSKTGWITMSHNWGQNWDVNMNLVGQSLSFLVTTSSGKILGFPHVAPTNWQFGQTYEGKQNF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00277 209 SMART dpbb_1 64 143 IPR007112 -
Vifa1g00277 209 Gene3D - 27 117 IPR036908 -
Vifa1g00277 209 PRINTS Expansin signature 195 209 IPR002963 GO:0009664
Vifa1g00277 209 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vifa1g00277 209 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vifa1g00277 209 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vifa1g00277 209 SUPERFAMILY Barwin-like endoglucanases 28 134 IPR036908 -
Vifa1g00277 209 Pfam Lytic transglycolase 64 114 IPR009009 -
Vifa1g00277 209 Pfam Expansin C-terminal domain 117 194 IPR007117 -
Vifa1g00277 209 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 126 IPR007112 -
Vifa1g00277 209 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vifa1g00277 209 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vifa1g00277 209 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vifa1g00277 209 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 126 205 IPR007117 -
Vifa1g00277 209 Gene3D - 118 209 IPR036749 -
Vifa1g00277 209 SUPERFAMILY PHL pollen allergen 114 205 IPR036749 -
Vifa1g00277 209 CDD DPBB_EXPA_N 29 116 - -
Vifa1g00277 209 PANTHER EXPANSIN-A15 19 113 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00277 Vifa-Chr1 42801736 42802590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00277 20 209 Expansin Gene Family AT5G39280 53.648 2.43e-84 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00277 - - tpra:123886237 280.026