Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00276 ATGGCTATGTCTCATTTTTTGGTTTCTTTGTTCTTTTTCGTGATGCTTCTTGTACAAGTTATGTCCGGTGGCATTGACTTAACTTGGTATGATGCTCGTGCAACCTTCTATGGTGATGCAGCTGGTGGTGAAACAATGCAGGGAGCTTGTGGTTATGGTGATCTGTTCAAACAAGGGTATGGACTTGAGACCACAGCACTAAGCACTGCTTTGTTCAATAACGGATTAACTTGTGGTGCATGTTTTCAGATAATATGTGTTAATGACCCTCAATGGTGCATAAAGGGTGCAGCACCAATCACAGTGACTGCAACAAATTTTTGTCCTCCAGATTATTCAAAAACCACAGACATTTGGTGTAACCCTCCACAAAAACATTTTGATTTGACTTATAAAATGTTCACATCTATTGCCTATTATAAAGCTGGTGTAATCCCGGTTAAATATCGACGCGTTCCATGCGTAAAAAATGGAGGTGTTAGGTTTGAACTAAAAGGAAACCCTTATTTTTTGATGGTTTTGGTTTACAATGTTGCTAATGCTGGTGATGTTACTAATGTGAGTATTCAAGGATCTAAGACTGGCTGGATTACCATGTCACACAATTGGGGACAAAATTGGGATGCCACAATGAATTTTTTAGGGCAATGTTTGTCATTTCTTGTTACTACAAGTGATGGAAAAAGTTTGAACTTTCCCTTTGTAGTTCCTGACAATTGGCAATTTGGACAAAGTTATGAGGGCAAGCAAAATTTTTAA 759 0.3834 MAMSHFLVSLFFFVMLLVQVMSGGIDLTWYDARATFYGDAAGGETMQGACGYGDLFKQGYGLETTALSTALFNNGLTCGACFQIICVNDPQWCIKGAAPITVTATNFCPPDYSKTTDIWCNPPQKHFDLTYKMFTSIAYYKAGVIPVKYRRVPCVKNGGVRFELKGNPYFLMVLVYNVANAGDVTNVSIQGSKTGWITMSHNWGQNWDATMNFLGQCLSFLVTTSDGKSLNFPFVVPDNWQFGQSYEGKQNF 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00276 252 Gene3D - 21 154 IPR036908 -
Vifa1g00276 252 SUPERFAMILY Barwin-like endoglucanases 11 177 IPR036908 -
Vifa1g00276 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Vifa1g00276 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Vifa1g00276 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Vifa1g00276 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Vifa1g00276 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Vifa1g00276 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Vifa1g00276 252 Gene3D - 156 252 IPR036749 -
Vifa1g00276 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Vifa1g00276 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Vifa1g00276 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Vifa1g00276 252 CDD DPBB_EXPA_N 29 154 - -
Vifa1g00276 252 PANTHER EXPANSIN-A15 12 250 IPR002963 GO:0009664
Vifa1g00276 252 SMART dpbb_1 64 149 IPR007112 -
Vifa1g00276 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Vifa1g00276 252 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Vifa1g00276 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Vifa1g00276 252 Pfam Lytic transglycolase 64 149 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00276 Vifa-Chr1 42548780 42549674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00276 1 252 Expansin Gene Family AT5G39280 61.977 7.07e-122 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00276 - - zju:107415875 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00276 1 42548780 42549674 Vifa1g00276 1 42548780 42549674 ECH