Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00270 ATGGATTTCGAACCAGAATTTCCCATTCCAACTAGGAAGGAAATGGAAACCATAACAAACTACCTCGCCGTGGAACCAGATTTCATAGCCGCGGAAAACTTTTTCACAACCCGTCGCCACATTCTTCTTCGCAAGCACGCCGTTTCAATTATCGCCAAGCTCTCGAGGAGTATTGTTCCTGATACTGATGCATTTATTCCTTATCTTGCTATGAACTACTTCGATCGTTTCCTATCCAGACACAAAATGATTCTGAAGGATGTGGAAGGTTTTATGGATGCTGCAAAAGTTCGTTTGATTGCTATCGCTTGTCTCACCTTATCTGCCAAGATGAGGACAGGATACTTCTTAGTTAATCAGCTTCTAGACAAGCTATATTTGGAAATGGATGTGAGTATATCTTATCTGAAGGTAATGAGAATGGAGCTTATGATTCTTGATGAACTTCATTGGAAGATGCGATCTGTGACTGCTTTCTGCTTTCTGAACAACTATAACGCTTACTTCAAACGATTCGGTAGTTTTAAACGTCGTTGCATTAATGAGATCATAGTTCAAGCTCAAGGAGAGGTCGCCTTCATTCACTACTTGCCTTCTCACATTGCATTGTCTGCTTTTCTGGCTGCTGCCAAAATTGCATATCCCTCAAAGTTTAAGGAAATTGCAATACACATTGAGAGCAAAATTGACCTTCAAGGACAGGTGAAGGAATGTGTGAAGAAGATGGTTAATCTTTGCTATAGATTGAACATTGAGATAGAGGCCCCCGGATCAGAAATTTGCACGGCTTCAAGCAAAGTCGTGGCGGTATCTGAAGAGAAAACCAAAGAAGTTGGAACATCAGAGATAAAGGAAATCCAACAAAGCAGCGGTGAGGGGGCATTTGTGGTGGATTCATCTGAAGAAAAAGAAGAGACTCCTCTAATCAGGCAAAGACGGGACAAGGGAAAGATGGAGACTTCTCATTTGCAGGAGGACGTGGAGGTGTTATCTGATAAAACAGAAGTGGCAGCAGAAGAAATTGAGGTGGAAAAACGAAGATTGTTCAAGGGCAAGGCAGTGGATGTGACTGAAACATGTGATGATGATAAAGCCAGGGTTGAGGCTATAATTCAACGAGCAGTGGAAAAGGGTGCGGAGGCACAGGCACAACCACGGATGGAGGGATACATATCAGAGATTATAGAGCTTGCTGATCAGCCAAAGAGGCAGATGGACTTTGAGCTGAAGTGGCCCATTGTTGTTCCATCACTAGAAGAAGAAATAGAAGACGCGCAGCCACAAGAGTCCACAACCATAAGCCTTAAAATACCTGGGACTAGAAGGAGTGTAAATTTTGGCTGCGGTACCTGCAACGTCAGTTAG 1365 0.4308 MDFEPEFPIPTRKEMETITNYLAVEPDFIAAENFFTTRRHILLRKHAVSIIAKLSRSIVPDTDAFIPYLAMNYFDRFLSRHKMILKDVEGFMDAAKVRLIAIACLTLSAKMRTGYFLVNQLLDKLYLEMDVSISYLKVMRMELMILDELHWKMRSVTAFCFLNNYNAYFKRFGSFKRRCINEIIVQAQGEVAFIHYLPSHIALSAFLAAAKIAYPSKFKEIAIHIESKIDLQGQVKECVKKMVNLCYRLNIEIEAPGSEICTASSKVVAVSEEKTKEVGTSEIKEIQQSSGEGAFVVDSSEEKEETPLIRQRRDKGKMETSHLQEDVEVLSDKTEVAAEEIEVEKRRLFKGKAVDVTETCDDDKARVEAIIQRAVEKGAEAQAQPRMEGYISEIIELADQPKRQMDFELKWPIVVPSLEEEIEDAQPQESTTISLKIPGTRRSVNFGCGTCNVS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00270 454 Pfam Cyclin, C-terminal domain 189 246 IPR004367 -
Vifa1g00270 454 Pfam Cyclin, N-terminal domain 18 153 IPR006671 -
Vifa1g00270 454 PANTHER CYCLINS 19 259 IPR039361 -
Vifa1g00270 454 SUPERFAMILY Cyclin-like 16 153 IPR036915 -
Vifa1g00270 454 Gene3D - 66 154 - -
Vifa1g00270 454 Gene3D - 155 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00270 Vifa-Chr1 41785949 41788150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00270 68 249 Core Cell Cycle Gene Families AT1G70210 34.054 5.55e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00270 - K18812 tpra:123896490 396.356