Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00264 ATGGTATCATTTCTTCACACACTTCTAGCCCTTCCTTTATTGGTGTTATTCCTTTTCATGAAATACAAAACCAATATCAAGAACTCATCATCAACCTTTCCAAAAGGTCCAAAAGGCCTTCCCATTATTGGAAACCTCCATCAACTTGACATATCAAATCTCCATATTCAATTCTTGAATCTCTCAAAATTTTATGGCCCTCTTTTCTCCCTTCAAATTGGTTTCAAGAAAGCTATTGTTATTTCCACACCACAACTAGCTCAACAAATTCTCAAAGATCATGACCATGGTGTATCTAGTAGACCTCCATCACATGGCACACAAAAACTCTCTTACAATGGCATAGACATGATCTTTTCACCGTACAATGATTGTTGGAGAGAGATAAGAAAAATCTGTGTTGTCCACTTCTTTAGCTCCAAAAAGATTTCTAGCTTCTCTCCTATAAGAAAATCTGAGCTCTATGATTATATTCCTTTCATGGGATGGATTGATAAACTTACCGGGTCGATTGCTCGAGTTCACAACACTTTTAAGTCTTTGGATGCATTTTTTGAACAAGTGCTTAAGGAACATCTTGATCCTAATAATAGGAAGAAAGAAGAAGAAGAGAAGGATATAGTTGATGTTTTGCTTGAGCTAAAAAATCAAGGTCATCTCTCAATTCATCTCACCAATGATCACATCAAAGCTGTCCTTATGAACCTACTTGTAGCAGCTACGGACACAAGTGCAGCCACATCGGTTTGGGTGATGACTGCACTAATGAAGAATCCAAGAGCAATGAAGAAAGCTCAAGAAGAAATTAGAAACATATGTGGGAAAAAAGAGTTTATAGATGAAGATGATATTCAAAAGCTAGTATATCTCAAAGCTGTGATAAAAGAGACGCTGAGATATTATCCACCAGTACCACTGGCTCCAAGAGAGACCAACAAAAGTTTCATTCTAAATGGATATAAAATAGAACCAAAAACATTAGTGTATGTGAACATTTGGGCCATTCATAGGGATCCCGAGACATGGAAAGATCCAGACGAGTTTTATCCCGAAAGATTCTTAAACAATGATGTTGATTTTAAAGGATTAGATTTTGAGTTGATTCCGTTTGGTGGTGGGCGAAGAATTTGCCCGGGCATACCATTGGCAATCGCGATGCAAGAAATGGTAACTGCGAATCTTCTCAATTCGTTTGATTGGGAAATGCCTGAAGGTATGAGAAAGGAAGATATAGATATTGAAGGGTTGCCAGGACTTGCTAGACACAAGAAGAATCATCTCTGCCTTGTTGCCAAGAATCATATGTGA 1308 0.3769 MVSFLHTLLALPLLVLFLFMKYKTNIKNSSSTFPKGPKGLPIIGNLHQLDISNLHIQFLNLSKFYGPLFSLQIGFKKAIVISTPQLAQQILKDHDHGVSSRPPSHGTQKLSYNGIDMIFSPYNDCWREIRKICVVHFFSSKKISSFSPIRKSELYDYIPFMGWIDKLTGSIARVHNTFKSLDAFFEQVLKEHLDPNNRKKEEEEKDIVDVLLELKNQGHLSIHLTNDHIKAVLMNLLVAATDTSAATSVWVMTALMKNPRAMKKAQEEIRNICGKKEFIDEDDIQKLVYLKAVIKETLRYYPPVPLAPRETNKSFILNGYKIEPKTLVYVNIWAIHRDPETWKDPDEFYPERFLNNDVDFKGLDFELIPFGGGRRICPGIPLAIAMQEMVTANLLNSFDWEMPEGMRKEDIDIEGLPGLARHKKNHLCLVAKNHM 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00264 435 PRINTS P450 superfamily signature 292 303 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS P450 superfamily signature 239 256 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS P450 superfamily signature 368 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PANTHER CYTOCHROME P450 71B11-RELATED 154 432 - -
Vifa1g00264 435 SUPERFAMILY Cytochrome P450 34 430 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 CDD CYP71-like 65 427 - -
Vifa1g00264 435 Gene3D Cytochrome P450 26 149 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 FunFam Cytochrome P450 83B1 153 430 - -
Vifa1g00264 435 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 370 379 IPR017972 GO:0005506|GO:0016705
Vifa1g00264 435 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS E-class P450 group I signature 331 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS E-class P450 group I signature 367 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS E-class P450 group I signature 291 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 PRINTS E-class P450 group I signature 377 400 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 Gene3D Cytochrome P450 150 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 Pfam Cytochrome P450 159 426 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g00264 435 Pfam Cytochrome P450 34 153 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00264 Vifa-Chr1 41331620 41333844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00264 16 430 Cytochrome P450 AT5G25180 38.636 1.31e-112 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00264 - - ccaj:109806203 498.434