Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00261 ATGGGTAGGGTTATCAGGGTACAACGTAAAGGTGAGGGATCAATCTTCAAATCCCACACCCACCACCGTAAAGGCCCCACCAGATCCCGCAGTCTCGATTTCGGCGAAAGAAACGACTACCTCAAGGGAGTAATCACCGACATCATCCACGACCCAGGTCACGGTGCACCTCTTGCCATGGTCACTTTCCGTCACCCATTTAGGTATAAGAAACAGAACGAGCTTTTTGTTGTTGCTGAAGGATTATACACTGGGCAGGTTATTTATTGCAGGAAAAAAGCTACACTTGTTGTTGGTAATATTTTGCCGGTTAGGTCTATTCCTGAAGGAGCTGTGATTTGTAACATTGAACACCAAGTTGGTGATCGTGGTACTTTTGCTAGGTGTTATGGGGATTATCTTATTGTTATTAGTCATAATCCTGATAGTGATACATCTAGGGTTAAGCCTCCATCTGAGACTTCACGATGA 471 0.4459 MGRVIRVQRKGEGSIFKSHTHHRKGPTRSRSLDFGERNDYLKGVITDIIHDPGHGAPLAMVTFRHPFRYKKQNELFVVAEGLYTGQVIYCRKKATLVVGNILPVRSIPEGAVICNIEHQVGDRGTFARCYGDYLIVISHNPDSDTSRVKPPSETSR 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00261 156 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g00261 156 SMART Ribosomal_L2_C_2 96 155 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g00261 156 SUPERFAMILY Translation proteins SH3-like domain 99 153 IPR008991 -
Vifa1g00261 156 PANTHER RIBOSOMAL PROTEIN L2 2 154 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vifa1g00261 156 Pfam Ribosomal Proteins L2, C-terminal domain 98 155 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vifa1g00261 156 SUPERFAMILY Nucleic acid-binding proteins 1 96 IPR012340 -
Vifa1g00261 156 Gene3D - 90 156 IPR014722 -
Vifa1g00261 156 Gene3D - 1 86 IPR012340 -
Vifa1g00261 156 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vifa1g00261 156 FunFam 60S ribosomal protein L2 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00261 Vifa-Chr1 41103884 41104354 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00261 1 156 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 77.564 4.80e-91 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00261 K02938 - mnt:21409345 275.404