Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00258 ATGGATGGGAACCCTAACTCTTCCGACCTTCTCCGCCAATTTCAAGTAGCTCTCAAACGCAGCCGCCCTCCTGGTGGTGCTTCACAACCCAATGTCATGCGCCCAAAACGTTCTGCTGCTGCTGAAGCAAAGGCAAAGGCCATGAATAATTCTCACGACTCCCAAACCAGTCTCGATCATTCCGAGAATCACTCCATTTCTTTTCGAAAGGGTAGCAATCTTGTTGTTGCTGGAGAAGAAATGGAGTGCTTGCGAAGCGGCGTGCCTGAAGCATCAACCGGAACCAATGAAGATTTGAAGCACAAAATATTTCAGAAGGCCGAGTCTGATAAAAGTTTGATATCTGAGGGAGGCAAATTTTCAATGTTGCCAAGGAGAACAATAACTACTCAAGATCATTTACATAAATTTAAAAACTTTTTAAGCCAACCAGCTACACAATCTTCTGTAGTTGGTCCCTCGTGTGCAACAACTACATCAGTCCATTCAAGTTCAGCTCCCATGCTGAATTCTTTAACCGGTTCTTCTCATTCCCATCCAAATACTGCTGCAAATTTGGTTGCAAAATGTTGTGGAAACCCTAATCCTCATCCAATAACTCATGGGGTTATTAAATCGAAAAATACTTCTCTAAAAGAAACCAATAGATTATCAACCGATCAAGCAACTACTGCAGTCCAAGCTTGTAGTTCACTTACCGATGCTGAATTGACGTTTAAGGAGAGCAACCCACCGAAAGAGCTGCAAGGATGCGTTATAAAGAAAACTAGTACTTCTAATAATGTTTCTTGTAATGGTGATGCCTTAGCTAAAGGAAAAGACTCTGCAATTGCTACCAACACACTGCCTGAGGCTCCAACTGTATCTTCAGATGTGAAGTTGGAGTCTTTAAAGATAGGTAAAACAGATAAAGCTGCGCGGAAAATGACCTATGACCCTGTATCGTTTTTCAAAGTTAGTGGCAAGCTATATCAAAGGCTTGGAAGAATAGGTACAGGAGGAAGTAGTGAGGTACACAAAGTGATTTCACCAGACTGTACAATCTACGCGCTTAAAAAGATAAAACTAAAGGGTCGTGATTATGCTACTGCATATGGATTTTGTCAAGAGATTGAGTATCTAAACAAACTGAAAGGAAAAAGTAATATTATACAGCTCATAAATTATGAGGTGACTGACAAGGCTTTGCTCGAGGGAGTCATGAGAGGCTCTTTCAACAATAAGGGTGGTAAAGTCAAGGATGATGGATTTATATACATGGTGCTTGAGCACGGGGAAATTGATTTGGCTCATATGTTGTCTCAGAAGTGGAAGGAACTGGATGGGTGCAACCAAACCATAGATGAAAATTGGCTTAGGTTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACAATCCATGAGGAACGTATTGTGCATTCTGACTTGAAGCCTGCAAATTTCCTCCTTGTCAAAGGTTCCCTCAAATTAATCGATTTTGGTATAGCCAAAGCAATAATGAGTGATACAACAAACATCCAGCGGGATTCTCAGGTTGGCACTCTAAACTATATGTCACCAGAGGCATTTATGTGCAACGAGAGTGATGCGAATGGGAACATCATAAAGTGTGGTCGGTCATCCGATATTTGGTCCTTAGGCTGCATCCTTTATCAAATGGTATATGGTAGAACACCTTTTTCAGATTACAAGACATTTTGGGCCAAAGTAAAAGTGATAACTGATCCAAAGCATCAAATTACATATGAACCAGTTTCAAACCCATGGCTCGTTGATCTTATGAAGAAGTGTCTCGCATGGGATCGGAATGAAAGGTGGAGAATTCCTCAGTTACTTCTACACCCTTTTCTCGCTCCTCCGGTTTCATGTCATCCTTCTTTGTCCCAAGGTCATACTTTTAAATGGCTGCAACTTATTACTGAAACCAGTACATGTGACCAAGAAGCATTGCAGCTTTGTTGTCAGCTCCAACAGGTGCTTGGCGACCCGTTTAAGTTGGTAACTCCCGACACTTTAAATTCGCGAGACGGACAATGCAAGTTGTTGTCCCGTATATCACAACTCTGTTGTCAGCTGCAAGAACAATTAGCGAATTCTGATAACAAATAG 2109 0.4149 MDGNPNSSDLLRQFQVALKRSRPPGGASQPNVMRPKRSAAAEAKAKAMNNSHDSQTSLDHSENHSISFRKGSNLVVAGEEMECLRSGVPEASTGTNEDLKHKIFQKAESDKSLISEGGKFSMLPRRTITTQDHLHKFKNFLSQPATQSSVVGPSCATTTSVHSSSAPMLNSLTGSSHSHPNTAANLVAKCCGNPNPHPITHGVIKSKNTSLKETNRLSTDQATTAVQACSSLTDAELTFKESNPPKELQGCVIKKTSTSNNVSCNGDALAKGKDSAIATNTLPEAPTVSSDVKLESLKIGKTDKAARKMTYDPVSFFKVSGKLYQRLGRIGTGGSSEVHKVISPDCTIYALKKIKLKGRDYATAYGFCQEIEYLNKLKGKSNIIQLINYEVTDKALLEGVMRGSFNNKGGKVKDDGFIYMVLEHGEIDLAHMLSQKWKELDGCNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLNYMSPEAFMCNESDANGNIIKCGRSSDIWSLGCILYQMVYGRTPFSDYKTFWAKVKVITDPKHQITYEPVSNPWLVDLMKKCLAWDRNERWRIPQLLLHPFLAPPVSCHPSLSQGHTFKWLQLITETSTCDQEALQLCCQLQQVLGDPFKLVTPDTLNSRDGQCKLLSRISQLCCQLQEQLANSDNK 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00258 702 Pfam Protein kinase domain 324 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00258 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Vifa1g00258 702 FunFam serine/threonine-protein kinase mph1 isoform X1 438 620 - -
Vifa1g00258 702 ProSiteProfiles Protein kinase domain profile. 324 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00258 702 CDD PKc_Mps1 322 617 IPR027084 -
Vifa1g00258 702 SUPERFAMILY Protein kinase-like (PK-like) 315 625 IPR011009 -
Vifa1g00258 702 FunFam Dual specificity protein kinase TTK 317 403 - -
Vifa1g00258 702 Gene3D Phosphorylase Kinase; domain 1 317 403 - -
Vifa1g00258 702 Gene3D Transferase(Phosphotransferase) domain 1 439 622 - -
Vifa1g00258 702 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Vifa1g00258 702 MobiDBLite consensus disorder prediction 18 66 - -
Vifa1g00258 702 SMART serkin_6 324 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00258 702 PANTHER MIXED LINEAGE PROTEIN KINASE 36 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00258 Vifa-Chr1 40121481 40126172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00258 325 617 MAP Kinase Kinase Gene Family AT3G21220 27.063 2.30e-21 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vifa1g00258 Pkinase 7.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00258 K08866 - gmx:100795003 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00258 1 40121481 40126172 Vifa1g00258 1 40121481 40126172 ECH