LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g00253	ATGCCCACCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAATTCTTGGGAAGGAATCCTAAGAGTACAATCAACAACGTTGGTGATAGTAGTGACGGCTCTGGAGTTGTCGTCGTATCAGACGACAACCCAGTGATCAGCGTGGTGGAGTGTTACGCTTGCACACAAGTAGGTGTGCCAGTGTTCCACTCCACCAGCTGCGACAGCGGTCACCAGCCCGAATGGGAAGCATCAGCCGGGTCCTATCTAGTCCCAATCCAAAACCGTCCCGGAAAATTCGCTAGAGCGGTTGCAAGGGCAAACTGGGGACCGTTAGGAACGGTTTTAGATCCAAGGAGCAAGCGCGTACAAGTATGGAACCGCGCGTTGTTGTTGGCGCGTGGGGTGGCGTTGGCGATTGATCCGTTGTTTTTCTACGCGCTGTCGATTGGGAGGGAAGGGTCGCCGTGTTTGTATATGGACGGCGGTTTGGCGGCGGTTGTTACGGTGGCGCGTACGTGTGTGGATGCGGTGCATTTGTTTCATGTGTTGTTGCAGTTTAAGTTGGCGTATGTTTCGAGAGAATCGCTTGTTGTTGGGTGTGGGAAACTCGTGTGGGACGCACGTGCCATTGCTTCTCATTATCTTCGATCTTTCAAAGGTTTTTGGTTTGATGTTTTTGTTATTCTTCCAGTGCCTCAGGCTGTGTTTTGGCTAGTAGTACCAAAATTGATAAGAGAAGATAGGATTAAAATCATTATGACAACATTGCTATTGATTTTTTTGTTCCAATTTCTTCCCAAAGTTTATCATAGCATATGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGATTTGGACTTAATCTCATTGCTTACTTCATCGCTTCTCATGTTGCTGGAGGGTGTTGGTATGTCCTCGCGATTCAACGCGTTGCATCGTGCCTTCAGCAGCATTGTGAAAGAACTGTCGGATGCAATCTTTCTTTGTCGTGCTCGGAGGAGGTGTGCTATCAGTCAATATTACCACCGGGAACCATTGGAAATCCATGCGGCGGAAACTCAACGATGATGATGAGTAAGCCTGTGTGCTTAGATGGGGATGGACCCTTCAAATATGGGATTTACCAATGGGCACTTCCGGTTATATCGAGCAATTCCTTAGCTGTTAAGATTCTTTATCCAATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCTACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTTCTGAGTGGATTACTACTTTTCACTTTGTTGATTGGTAACATTCAGGTATTCTTACATGCTGTCATGGCAAAAAAGAGAAAGATGCAGCTGAGATGTCGCGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCGTCACGATTAAGACAAAGAGTTCGGCATTTTGAACGTCAGAGATGGGCGGCAATGGGAGGAGAAGATGAGATGGAACTTATCAAAGACTTACCTGAGGGTCTAAGGAGAGACATCAAGCGCTATCTTTGCTTGGACCTCATTAAAAAGGTACCATTGTTTCACAACTTGGATGATCTTATTCTTGACAACATTTGTGACAGGGTGAAGCCCTTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGCGATCCTGTACCGAGGATGGTATTCATTGTTCGCGGACGCATAAAGCGAAACCAAAGTCTAAGCAAAGGCATGGTAGCAACTAGTGTCCTCGAACCAGGAGGATTTTTAGGCGACGAACTACTTTCTTGGTGCCTAAGACGTCCTTTTATCGACCGGCTTCCAGCCTCCTCAGCTACATTTATCTGTCTTGAATCAACTGAAGCATTCGGTCTCGATGCTCAAAACTTGAGATACATAACCGATCACTTCCGGTACAAATTCGCAAACGAGAGACTAAAGAGAACAGCGAGATACTACTCGTCGAATTGGAGAACATGGGCTGCTGTCAACATTCAACTTGCGTATAGACGTTACAGGCGGAGGACTAGAGGTCCAGTGACTCCTGTAAGGGACAACGGCGGCTCTGAGCATAGGCTCTTGCAGTACGCTGCAATGTTCATGTCAATTAGGCCACACGATCATCTTGAATGA	2136	0.463	MPTFSSLPRWIGGKFLGRNPKSTINNVGDSSDGSGVVVVSDDNPVISVVECYACTQVGVPVFHSTSCDSGHQPEWEASAGSYLVPIQNRPGKFARAVARANWGPLGTVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAVVTVARTCVDAVHLFHVLLQFKLAYVSRESLVVGCGKLVWDARAIASHYLRSFKGFWFDVFVILPVPQAVFWLVVPKLIREDRIKIIMTTLLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQHCERTVGCNLSLSCSEEVCYQSILPPGTIGNPCGGNSTMMMSKPVCLDGDGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFICLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRRRTRGPVTPVRDNGGSEHRLLQYAAMFMSIRPHDHLE	711

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g00253	711	CDD	CAP_ED	524	634	IPR000595	-
	Vifa1g00253	711	Gene3D	Jelly Rolls	522	640	IPR014710	-
	Vifa1g00253	711	ProSiteProfiles	cAMP/cGMP binding motif profile.	524	634	IPR000595	-
	Vifa1g00253	711	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	101	677	-	-
	Vifa1g00253	711	SUPERFAMILY	Voltage-gated potassium channels	110	445	-	-
	Vifa1g00253	711	SUPERFAMILY	cAMP-binding domain-like	451	638	IPR018490	-
	Vifa1g00253	711	Pfam	Ion transport protein	117	442	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Vifa1g00253	711	Gene3D	-	150	447	-	-
	Vifa1g00253	711	Gene3D	Helix hairpin bin	450	515	-	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g00253	Vifa-Chr1	39757803	39761189	Tandem

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g00253	42	711	Ion Channels	AT5G15410	79.619	0.0	1060

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g00253	K05391		-	gmx:100798823	1189.48

Showing 1 to 1 of 1 entries

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa1g00253	1	39757803	39761189	Vifa1g00253	1	39757803	39761189	ECH

Showing 1 to 1 of 1 entries