Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00253 ATGCCCACCTTCTCCTCTCTCCCTAGGTGGATTGGTGGAAAATTCTTGGGAAGGAATCCTAAGAGTACAATCAACAACGTTGGTGATAGTAGTGACGGCTCTGGAGTTGTCGTCGTATCAGACGACAACCCAGTGATCAGCGTGGTGGAGTGTTACGCTTGCACACAAGTAGGTGTGCCAGTGTTCCACTCCACCAGCTGCGACAGCGGTCACCAGCCCGAATGGGAAGCATCAGCCGGGTCCTATCTAGTCCCAATCCAAAACCGTCCCGGAAAATTCGCTAGAGCGGTTGCAAGGGCAAACTGGGGACCGTTAGGAACGGTTTTAGATCCAAGGAGCAAGCGCGTACAAGTATGGAACCGCGCGTTGTTGTTGGCGCGTGGGGTGGCGTTGGCGATTGATCCGTTGTTTTTCTACGCGCTGTCGATTGGGAGGGAAGGGTCGCCGTGTTTGTATATGGACGGCGGTTTGGCGGCGGTTGTTACGGTGGCGCGTACGTGTGTGGATGCGGTGCATTTGTTTCATGTGTTGTTGCAGTTTAAGTTGGCGTATGTTTCGAGAGAATCGCTTGTTGTTGGGTGTGGGAAACTCGTGTGGGACGCACGTGCCATTGCTTCTCATTATCTTCGATCTTTCAAAGGTTTTTGGTTTGATGTTTTTGTTATTCTTCCAGTGCCTCAGGCTGTGTTTTGGCTAGTAGTACCAAAATTGATAAGAGAAGATAGGATTAAAATCATTATGACAACATTGCTATTGATTTTTTTGTTCCAATTTCTTCCCAAAGTTTATCATAGCATATGCATGATGAGAAGAATGCAAAAAGTCACAGGCTACATCTTTGGCACCATTTGGTGGGGATTTGGACTTAATCTCATTGCTTACTTCATCGCTTCTCATGTTGCTGGAGGGTGTTGGTATGTCCTCGCGATTCAACGCGTTGCATCGTGCCTTCAGCAGCATTGTGAAAGAACTGTCGGATGCAATCTTTCTTTGTCGTGCTCGGAGGAGGTGTGCTATCAGTCAATATTACCACCGGGAACCATTGGAAATCCATGCGGCGGAAACTCAACGATGATGATGAGTAAGCCTGTGTGCTTAGATGGGGATGGACCCTTCAAATATGGGATTTACCAATGGGCACTTCCGGTTATATCGAGCAATTCCTTAGCTGTTAAGATTCTTTATCCAATTTTTTGGGGTTTGATGACCCTCAGCACTTTTGGAAATGATCTTGAACCTACAAGTAACTGGCTAGAAGTGATTTTCAGCATATGCATTGTTCTGAGTGGATTACTACTTTTCACTTTGTTGATTGGTAACATTCAGGTATTCTTACATGCTGTCATGGCAAAAAAGAGAAAGATGCAGCTGAGATGTCGCGACATGGAATGGTGGATGAGGAGGAGGCAGTTGCCGTCACGATTAAGACAAAGAGTTCGGCATTTTGAACGTCAGAGATGGGCGGCAATGGGAGGAGAAGATGAGATGGAACTTATCAAAGACTTACCTGAGGGTCTAAGGAGAGACATCAAGCGCTATCTTTGCTTGGACCTCATTAAAAAGGTACCATTGTTTCACAACTTGGATGATCTTATTCTTGACAACATTTGTGACAGGGTGAAGCCCTTAGTCTTCTCTAAAGATGAAAAGATAATTAGAGAAGGCGATCCTGTACCGAGGATGGTATTCATTGTTCGCGGACGCATAAAGCGAAACCAAAGTCTAAGCAAAGGCATGGTAGCAACTAGTGTCCTCGAACCAGGAGGATTTTTAGGCGACGAACTACTTTCTTGGTGCCTAAGACGTCCTTTTATCGACCGGCTTCCAGCCTCCTCAGCTACATTTATCTGTCTTGAATCAACTGAAGCATTCGGTCTCGATGCTCAAAACTTGAGATACATAACCGATCACTTCCGGTACAAATTCGCAAACGAGAGACTAAAGAGAACAGCGAGATACTACTCGTCGAATTGGAGAACATGGGCTGCTGTCAACATTCAACTTGCGTATAGACGTTACAGGCGGAGGACTAGAGGTCCAGTGACTCCTGTAAGGGACAACGGCGGCTCTGAGCATAGGCTCTTGCAGTACGCTGCAATGTTCATGTCAATTAGGCCACACGATCATCTTGAATGA 2136 0.463 MPTFSSLPRWIGGKFLGRNPKSTINNVGDSSDGSGVVVVSDDNPVISVVECYACTQVGVPVFHSTSCDSGHQPEWEASAGSYLVPIQNRPGKFARAVARANWGPLGTVLDPRSKRVQVWNRALLLARGVALAIDPLFFYALSIGREGSPCLYMDGGLAAVVTVARTCVDAVHLFHVLLQFKLAYVSRESLVVGCGKLVWDARAIASHYLRSFKGFWFDVFVILPVPQAVFWLVVPKLIREDRIKIIMTTLLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLQQHCERTVGCNLSLSCSEEVCYQSILPPGTIGNPCGGNSTMMMSKPVCLDGDGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMELIKDLPEGLRRDIKRYLCLDLIKKVPLFHNLDDLILDNICDRVKPLVFSKDEKIIREGDPVPRMVFIVRGRIKRNQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFICLESTEAFGLDAQNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQLAYRRYRRRTRGPVTPVRDNGGSEHRLLQYAAMFMSIRPHDHLE 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00253 711 CDD CAP_ED 524 634 IPR000595 -
Vifa1g00253 711 Gene3D Jelly Rolls 522 640 IPR014710 -
Vifa1g00253 711 ProSiteProfiles cAMP/cGMP binding motif profile. 524 634 IPR000595 -
Vifa1g00253 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 101 677 - -
Vifa1g00253 711 SUPERFAMILY Voltage-gated potassium channels 110 445 - -
Vifa1g00253 711 SUPERFAMILY cAMP-binding domain-like 451 638 IPR018490 -
Vifa1g00253 711 Pfam Ion transport protein 117 442 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa1g00253 711 Gene3D - 150 447 - -
Vifa1g00253 711 Gene3D Helix hairpin bin 450 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00253 Vifa-Chr1 39757803 39761189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00253 42 711 Ion Channels AT5G15410 79.619 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00253 K05391 - gmx:100798823 1189.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00253 1 39757803 39761189 Vifa1g00253 1 39757803 39761189 ECH