Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00250 ATGGATACCTATAACAATGAGAAAGGTAACAATATAATGGAAATTCCCACTCCACAAACAGATGATAGTGATACCCTCTTAGCCATGGTTCTAGGTGCCAATATGGTGTTTCCTGCAGTTCTTAATGCTGCAATTGAACTCAACTTGTTTGAAATCATTGCTAAAGAAAGTAATGATGGATTCACGTCAGCTATTGAAATTGCTTCAAAGTTACAAGCTCAACACTCTGACTTACCAAATCGGCTTGAACGTATGTTGTGCATGCGTGCTAGCTACTCTCTTCTTTCTGTCTCCACTCGCACTAATGACAACGGTAGCAATGAAGCAATAATTGATCCGGAGATTGATCTATTCAAGAAAGTTAATGGAATATCCAAGTATGAGTACTTTGGGAAAGATCAACAAATAAACAGACTATTTAACAAATCAATGACTGATACATGCAATGTTCATATTAAAAGAGTCCTTGACATATACAAAGGATTTGAGGGATTATCAACTTCGGTTGATGTAGGAGGTGGCAATGGACAGAGTCTCAAATTGATTATTGCCAAATATCCATCAATAAAGGCAATCAATTTCGACCTTCCACAAGTGATTGACAATGCACCGCCCTTTACGGATATTGAACATGTTGGAGGAAGTATGTTTGAGAGTATTCCAAAAGGAGATGCCATAATACTTAAGATTGATGAACAATGCATAGAAATTTTAAGAAATTGTCACAAAGCTATACCTCCAAATGGAAAGCTGGTGGAAGGGAAAGAACTCCAAAAGAATACGAGTTTGGGTAAACAAAAACAGGCTGGATTTTCTAAGCTTCAAGTTGTTTGTCGCGCTTTCTCCATAGTCGGAGTCATGGAACTTTACAAATAA 876 0.3733 MDTYNNEKGNNIMEIPTPQTDDSDTLLAMVLGANMVFPAVLNAAIELNLFEIIAKESNDGFTSAIEIASKLQAQHSDLPNRLERMLCMRASYSLLSVSTRTNDNGSNEAIIDPEIDLFKKVNGISKYEYFGKDQQINRLFNKSMTDTCNVHIKRVLDIYKGFEGLSTSVDVGGGNGQSLKLIIAKYPSIKAINFDLPQVIDNAPPFTDIEHVGGSMFESIPKGDAIILKIDEQCIEILRNCHKAIPPNGKLVEGKELQKNTSLGKQKQAGFSKLQVVCRAFSIVGVMELYK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00250 291 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 116 287 IPR029063 -
Vifa1g00250 291 SUPERFAMILY "Winged helix" DNA-binding domain 22 108 IPR036390 -
Vifa1g00250 291 Pfam Dimerisation domain 40 86 IPR012967 GO:0046983
Vifa1g00250 291 Gene3D - 5 112 IPR036388 -
Vifa1g00250 291 FunFam Caffeic acid 3-O-methyltransferase 7 112 - -
Vifa1g00250 291 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 291 IPR016461 GO:0008168
Vifa1g00250 291 PANTHER O-METHYLTRANSFERASE 29 252 IPR016461 GO:0008168
Vifa1g00250 291 Pfam O-methyltransferase domain 116 252 IPR001077 GO:0008171
Vifa1g00250 291 Gene3D Vaccinia Virus protein VP39 127 291 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00250 Vifa-Chr1 39732247 39733805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00250 16 291 Monolignol Biosynthesis Gene Families AT5G54160 36.056 1.49e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00250 - - gmx:100798295 332.028