Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00246 ATGTCCACCGCCAATCCCTCCGACACCGACACGGCGTCACCGCCATCTCGTCCCACCATCACCCTCCCTCCCCGTCCCTCCGTCGAAGCTTTCTTCGCCGGCGCCGCCAGTCCCGGTCCCATGACACTGGTTTCAAGCTTCTTCGCTACTGAATCCGCCACTTTCTCTCAGCTTCTCGCCGGAGCTATGGCGTCTCCGCTCGCGTACTCTTCCGCCGCGGCGGAGAATTACTTTGTTAAAGAAGATGAGTTCTCCGTGTCCCACAGAAGTACAGGGTTTAAGCAGAGTCGACCGATGAACCTGATTGTTGCGCGGTCGCCGGTGTTTACTATTCCTCCTGGTTTGAGTCCGTCTGGGTTTTTGAACTCGCCTGGATTCTTTTCTCCACAGAGCCCCTTTGGGATGTCACACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTTGCACAATCTCATAATATGCACATGCAACCTGAATATCAACTGGTCTCATTTGATCCTCCCACCGACCAACTGGTAGAGCAGCAGTCTTTTACTCGAAATGAATCTTCGGAGCAGCAAGTGGCAGCACCTGTATCAGAATCTAGAAATGCTCAAATGGAAACGTCGGAGATTACAGACTCTGATAAGAAATATCAACCACCTTCCCTACCGATTGACAAACCTGCAGATGATGGCTACAACTGGCGCAAGTATGGACAGAAGCAGGTTAAGGGGAGTGAGTATCCGCGGAGCTACTATAAATGCACACATCTGAATTGTCCCGTCAAGAAAAAAGTTGAGCGTGCCCCTGACGGTCATATAACTGAAATTATCTATAAAGGCCAGCATAATCATGAGAAGCCTCAGGTAAATAGGCGCATCAAAGAAAATAGTGATGTGAATGGAAATGCAAACGTTCAACATAACTCAAACTCACAAGGGGATTCTAGACCACTACCGAGATCAACTGAAATTGTGGAAGTGGATGATGCAGACAATAAGGAAGAGGGAGGTGACTCGGGGCCAAACCCAAAGAGAAGGAGCATTGAGCCTGTTGTTCCGGAAGCACCTGCATCTCAGAAGACTGTCACAGAACCCAAAATCATTGTGCAAACAAGAAGTGAAGTTGATCTTTTAGACGACGGCTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCTAGGAGTTATTACAAGTGCACTAGTGCAGGATGCAATGTGCGCAAACACGTTGAGAGAGCATCAACGGACCCAAAAGCTGTCATAACTACGTACGAGGGAAAACATAATCACGACGTCCCTGCTGCTAGAAACAGTAGCCACCACACAGCTAATAGCAATTCAATGCCATCAAAGCCAACGGCAAGGGTGCCAGAGAAGCATCCTTTGCTTAAAGATATGGAGTTCGCAAACAATGATCAGAGACCTGTACATTTGCGCTTAAAAGAAGAGCAGATCATAGTATAA 1470 0.4823 MSTANPSDTDTASPPSRPTITLPPRPSVEAFFAGAASPGPMTLVSSFFATESATFSQLLAGAMASPLAYSSAAAENYFVKEDEFSVSHRSTGFKQSRPMNLIVARSPVFTIPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHNMHMQPEYQLVSFDPPTDQLVEQQSFTRNESSEQQVAAPVSESRNAQMETSEITDSDKKYQPPSLPIDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAPDGHITEIIYKGQHNHEKPQVNRRIKENSDVNGNANVQHNSNSQGDSRPLPRSTEIVEVDDADNKEEGGDSGPNPKRRSIEPVVPEAPASQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHHTANSNSMPSKPTARVPEKHPLLKDMEFANNDQRPVHLRLKEEQIIV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00246 489 ProSiteProfiles WRKY domain profile. 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 FunFam WRKY transcription factor 33 362 428 - -
Vifa1g00246 489 MobiDBLite consensus disorder prediction 178 204 - -
Vifa1g00246 489 Pfam WRKY DNA -binding domain 376 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 MobiDBLite consensus disorder prediction 178 230 - -
Vifa1g00246 489 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 123 454 IPR044810 GO:0003700
Vifa1g00246 489 SUPERFAMILY WRKY DNA-binding domain 367 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 MobiDBLite consensus disorder prediction 1 16 - -
Vifa1g00246 489 MobiDBLite consensus disorder prediction 296 315 - -
Vifa1g00246 489 SUPERFAMILY WRKY DNA-binding domain 224 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 MobiDBLite consensus disorder prediction 296 358 - -
Vifa1g00246 489 MobiDBLite consensus disorder prediction 438 454 - -
Vifa1g00246 489 SMART WRKY_cls 225 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 FunFam WRKY transcription factor 212 285 - -
Vifa1g00246 489 MobiDBLite consensus disorder prediction 431 460 - -
Vifa1g00246 489 Gene3D WRKY domain 360 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 Gene3D WRKY domain 219 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa1g00246 489 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00246 Vifa-Chr1 39276357 39280417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00246 6 487 WRKY Transcription Factor Family AT2G03340 51.992 2.37e-142 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa1g00246 WRKY 9.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00246 - - gmx:100796679 704.516