Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00231 ATGGCAGCAGCTTATGTATTCACCGTCTCACAGGACGGAACCGGAGATTTTCAAACGGTGCAACAAGCAATTGACGCTGTGCCGTTCGGCAACTCTCGCCGGACTGTCATCCGTGTATCTCCCGGAATCTACCGCCAGCCTGTATACGTTCCCAAAACCAAGAATTTCATCACTCTTGCTGGGTTGTGCCGCGAGGATACTGTGATTACTTGGAACAACACTGCCACCAAAATTGAACACCATCAACCTGCTAGGCTGATTGGTACTGGGACATTTGGTTGTGGAACTACTATTGTGGAAGGGGAAGACTTTATTGCCGAGAATATTACTTTTGAGAATTCTTCCCCTCAGGGTTCAGGACAGGCGGTGGCAATTAGAGTAACAGCAGATCGTTGCGCCTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACGCTGTACTTACATTACGGTAAACAATATTTGAAAGATTGCTATATTGAAGGAAGCGTGGACTTTATCTTCGGCAATAGCACTTCTCTTTTGGAGCACTGTCATATTCACTGCAAATCTGCAGGGTACATAACTGCACAGGCTAGAAAATCTTCGCAGGAAACAACTGGTTATGTATTCTTGAGATGCGTTATCACAGGTAATGGAGGAACTTCATATGCATATCTTGGACGACCGTGGGGACCTTTTGGAAGAGTGGTCTTTGCATACACTTACATGGATCCGTGTATAAGACAAGTTGGTTGGGATAACTGGGGGAAAGTTGAGAATGAGAGGAGTGCTTGCTTTTACGAATATAGGTGTTTTGGACCTGGTTGTTGTCCAACCGATCGAGTAGGGTGGTGTAGAGAATTGATTGATGAAGAAGCGGAACAGTTCATCTTGCATCCTTTCATTGATCCAGAACCAAATAGATCTTGGCTTTGTCAAAGAATGGGATTGAGGATTCCATATTCTGCTTAG 954 0.4507 MAAAYVFTVSQDGTGDFQTVQQAIDAVPFGNSRRTVIRVSPGIYRQPVYVPKTKNFITLAGLCREDTVITWNNTATKIEHHQPARLIGTGTFGCGTTIVEGEDFIAENITFENSSPQGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTSLLEHCHIHCKSAGYITAQARKSSQETTGYVFLRCVITGNGGTSYAYLGRPWGPFGRVVFAYTYMDPCIRQVGWDNWGKVENERSACFYEYRCFGPGCCPTDRVGWCRELIDEEAEQFILHPFIDPEPNRSWLCQRMGLRIPYSA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00231 317 ProSitePatterns Pectinesterase signature 2. 160 169 IPR033131 -
Vifa1g00231 317 FunFam Pectinesterase 3 310 - -
Vifa1g00231 317 SUPERFAMILY Pectin lyase-like 2 299 IPR011050 -
Vifa1g00231 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 299 - -
Vifa1g00231 317 Pfam Pectinesterase 8 297 IPR000070 GO:0030599|GO:0042545
Vifa1g00231 317 Gene3D - 2 309 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00231 Vifa-Chr1 37392663 37395106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00231 6 308 Carbohydrate Esterase AT5G47500 39.297 1.78e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00231 K01051 - gmx:100795636 603.594