Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00226 ATGTACTATACAACCATGATGGTTTCATCCTCCAAAATTGTGTTCTTTGTGCCAATGTTACTAACTATTCTTGTTGCTTTGCAGGTCACTAATGGTGAATATAAGTATGAAGCCTTTTTTCCGAAAGTTGAAGTTGTGATTAGGAACAACATGAGTGGTACTCCAGCAGGTCTTCATTGTAAAGATAAAGACCATGATGATGGGTTTCATAGAATAGATTATGGTGAAGCCCACACCTTCTCTGCCATGTACGTACCTCTTTTGGGACGTGCCTTATGGTTTTGTCGATTTAAATGGGGTGAATTTGAATTTCAAAGACAATATCGATACTTTGACATTTTTGTTCAAAAGAGAGATCTGCACATTTGTCCAGCACATTGCTATTGGTCGATAAATGAATATGGACCATGTAGAATTTGCGAAACAACTTTCGAATGCTATCCTTGGAATGATGAGAATAATGCTCTTAATGTGTAA 477 0.369 MYYTTMMVSSSKIVFFVPMLLTILVALQVTNGEYKYEAFFPKVEVVIRNNMSGTPAGLHCKDKDHDDGFHRIDYGEAHTFSAMYVPLLGRALWFCRFKWGEFEFQRQYRYFDIFVQKRDLHICPAHCYWSINEYGPCRICETTFECYPWNDENNALNV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00226 158 PANTHER - 40 138 IPR010264 -
Vifa1g00226 158 Pfam Plant self-incompatibility protein S1 44 149 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00226 Vifa-Chr1 37068410 37068886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00226 41 153 Carbohydrate Esterase AT3G16970 30.833 5.42e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00226 - - tpra:123904583 147.517