Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00221 ATGGGAAGATCACCATGTTGTGAAAAAGTTGGTTTAAAGAAAGGGCCTTGGACACCAGAGGAAGATCAAAAACTTTTATCTTACATTGAAGAACATGGTCATGGAAGCTGGCGTGCTCTTCCTATAAAAGCTGGACTTGAGAGGTGTGGGAAGAGTTGTAGGTTGAGATGGACTAATTATCTTAGGCCTGATATTAAGAGAGGGAAGTTTAGTTTGCAAGAAGAGCAAACTATTATTCAACTTCATGCACTTTTAGGGAACAGGTGGTCATCAATAGCCACACATTTACCTAAGAGAACAGATAATGAAATCAAGAACTATTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGATCCTATTACGCACAAGCCAAAAAATGAAACTCTTTTCTCCGATAATCATTCCAAGAATGCAGCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCTGAAGCAAGATTGGTTAGAGAATCAAAGCTACGTTCACAATACTCATTGCAACAACAACAACATCAACTTGGAAGTAATAATAACTCGGTTTTTCCGTCACAATCTTCGTCATCGACTTCATCGTCTTCGATTCAAGTACTTGATATTAAAGAAGAAGGGGGAGAAAGAGTGGAAAGGCTATGA 657 0.3836 MGRSPCCEKVGLKKGPWTPEEDQKLLSYIEEHGHGSWRALPIKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPITHKPKNETLFSDNHSKNAANLSHMAQWESARLEAEARLVRESKLRSQYSLQQQQHQLGSNNNSVFPSQSSSSTSSSSIQVLDIKEEGGERVERL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00221 218 Gene3D - 13 66 - -
Vifa1g00221 218 CDD SANT 69 112 IPR001005 -
Vifa1g00221 218 Gene3D - 69 116 - -
Vifa1g00221 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa1g00221 218 FunFam MYB transcription factor 69 116 - -
Vifa1g00221 218 CDD SANT 16 61 IPR001005 -
Vifa1g00221 218 MobiDBLite consensus disorder prediction 171 205 - -
Vifa1g00221 218 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa1g00221 218 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g00221 218 MobiDBLite consensus disorder prediction 171 218 - -
Vifa1g00221 218 SMART sant 13 63 IPR001005 -
Vifa1g00221 218 SMART sant 66 114 IPR001005 -
Vifa1g00221 218 FunFam MYB-related transcription factor 13 66 - -
Vifa1g00221 218 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g00221 218 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa1g00221 218 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g00221 218 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 201 - -
Vifa1g00221 218 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00221 Vifa-Chr1 36097609 36099805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00221 1 201 MYB Transcription Factor Family AT3G01140 78.325 5.60e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g00221 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00221 K09422 - qsu:111998628 333.954