Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00216 ATGTTGGAGACAAAAGACTCTGCGATCAAACTCTTCGGAAAAACAATTCCGGTTAAGGAGATTCTTGTCGGTCTTTCACCTTTGTCTTCTGCTCATGTTGTTGTTCATCACAGTATTCATGATTCTTCTACAAACTCATCTAGAGACTCTCATAATACTATTGATGCAAAAGAGCAAGAGATTCCGCAGGATACATTGGGAGAAAAATCGACTGATGAAAAGAATGGAGATGGAGCCCCTACGCAATCGACTGAAGAATTCACCAATCCAGATGCAGCCTCTAGGACTGGCGAAGAATCCGTTACTGCATCCACTGAAAAAGAGGTTGCTACATTGAAAACTTCGAAGACCGAAGAAGAACAGGACGAAACGAGTAACTCACAGGAAAAGAGCCTCAAAAAACCCGACAAAATAATCCCGTGTCCGCGCTGTAGTAGCATGGACACAAAGTTCTGCTACTATAACAATTACAATGTCAACCAACCTCGCCACTTTTGCAAGAATTGTCAGAGATATTGGACTGCCGGTGGAACCATGAGAAACGTACCCGTAGGTGCTGGTCGCAGAAGGAACAAGAGCTGTTCTTCTCACTACCGACAGATAACTGTCTCCGAAGCAACACTCCAAAACTCTCGGGTACACCCTTCCTTGAAATGCAACGGCACTGTCCTTACATTTGGATCCGATTCACCTTTATCTGAATCGATGGCATCTGTTTTGAAACTTGCTCATAAACCTGAAGAACTAAGAATTCGTGTTCCGTATGCAAGTGGAGAAAAAGGAGACGATCAATCCAATAAATCATCGGTTACATCCGTAAAGTCGACTGAAGGTGCAAGCACGAACATATCCCAAGAACAGGCTATGCAGTATGGACAAAGCTTCTCACCACAAGGTCACTACTTTCCTCCTGGAACTCCTTGTCCTTTCCCATGGAATCCAATGCAATGGAGGTCACCGGTTCCACCACATGCGTTTTATCCACCGGGATTTTCTTTGCCGTTCTATCCCCCAACCCCAACTGCAACAACTTACTGGGGATGGAACGTCCCGCGGCAAGCACAACCGTCATCACCGAATGGTGCCGGCCCTAACTCTAGTGCAAACTCTCTAACCTTAGGCAAACATTCAAGGGATGATAGCCTTCTAAAATCAAGCGAAGGAAATGAAAGGAAAGAAAGTAGCGACGAAAAGTGTCTGTGGTTTCCAAAATCTTTGAGGATCGATGACTCGGGAGAAGCAGAAAAAACCTCTTTCTGGACTACACTCGGGATTAAAAACAACAACTCCAGTCCAGTTCCGTCCGGAAGACTCTTTCACACATTCCCTTCAAAGCGTGACGAGAAGAATGACTCAGACCAATCATCTTCAGTCTTGCAAGCCAATCCGGCGGCATTGTCTAGGTCGCATAACTTTCACGAGACTTCGTAA 1431 0.4521 MLETKDSAIKLFGKTIPVKEILVGLSPLSSAHVVVHHSIHDSSTNSSRDSHNTIDAKEQEIPQDTLGEKSTDEKNGDGAPTQSTEEFTNPDAASRTGEESVTASTEKEVATLKTSKTEEEQDETSNSQEKSLKKPDKIIPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRRNKSCSSHYRQITVSEATLQNSRVHPSLKCNGTVLTFGSDSPLSESMASVLKLAHKPEELRIRVPYASGEKGDDQSNKSSVTSVKSTEGASTNISQEQAMQYGQSFSPQGHYFPPGTPCPFPWNPMQWRSPVPPHAFYPPGFSLPFYPPTPTATTYWGWNVPRQAQPSSPNGAGPNSSANSLTLGKHSRDDSLLKSSEGNERKESSDEKCLWFPKSLRIDDSGEAEKTSFWTTLGIKNNNSSPVPSGRLFHTFPSKRDEKNDSDQSSSVLQANPAALSRSHNFHETS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00216 476 PANTHER CYCLIC DOF FACTOR 2 5 476 IPR045174 GO:0003700|GO:0006355
Vifa1g00216 476 MobiDBLite consensus disorder prediction 111 136 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 349 396 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 51 75 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 349 376 - -
Vifa1g00216 476 Pfam Dof domain, zinc finger 137 193 IPR003851 GO:0003677|GO:0006355
Vifa1g00216 476 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Vifa1g00216 476 MobiDBLite consensus disorder prediction 76 110 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 377 396 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 255 283 - -
Vifa1g00216 476 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Vifa1g00216 476 MobiDBLite consensus disorder prediction 454 476 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 261 283 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 424 476 - -
Vifa1g00216 476 MobiDBLite consensus disorder prediction 39 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00216 Vifa-Chr1 34191032 34193555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00216 6 476 C2C2-Dof Transcription Factor Family AT5G39660 42.032 3.96e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g00216 zf-Dof 5.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00216 - - mtr:11410541 676.781