Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00212 ATGACAAAAAGATATTGGAACATCACTTTTGAAGAGATGATGGAAGCTGGGGTTCATTTTGGCCATGAGCCTAGGAACTGGAATCCTCGAATGGCACCTTTTATATCGGGAAAACGTAAAGGTATTCATATTACAAATCTTACTAAAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTGGTTTTTGATGCAGCAAGCACAGGAAAACAATTTTTAATTGTTGAAACGAGACTTCGTGAGTTCAGGGACTTGAGAACAGAGCAAAAGACGGGGAAACTGAACTCTCTTCCAAAAAGAGATGCCACTATGTTGAAGAGACAATTATCTCATTTGGAAAGATATCTAGGCGGTATAAAATATATGACAAGATTACCTGATATTGTAATAATCCTTGATCAGCAAGAAGAATATACGGCTCTTCAAGAATGTATCACTTTGGGAATTCCAACGATTTCTTTAATTGATACAAATTCTGACCCAGATCTTGCAGATATTTCGATTCCGGCTAATGATGATGCTATAGCTTCCATCGGATTAATTCTTAACAAATTAGTTTTTGCAATTTGTGAGGGTCGTTCTAGCTATATACAAAAAAATTGA 600 0.3583 MTKRYWNITFEEMMEAGVHFGHEPRNWNPRMAPFISGKRKGIHITNLTKTARFLSEACDLVFDAASTGKQFLIVETRLREFRDLRTEQKTGKLNSLPKRDATMLKRQLSHLERYLGGIKYMTRLPDIVIILDQQEEYTALQECITLGIPTISLIDTNSDPDLADISIPANDDAIASIGLILNKLVFAICEGRSSYIQKN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00212 199 Hamap 30S ribosomal protein S2 [rpsB]. 6 192 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa1g00212 199 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 PRINTS Ribosomal protein S2 signature 41 50 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 PRINTS Ribosomal protein S2 signature 10 28 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 SUPERFAMILY Ribosomal protein S2 11 195 IPR023591 -
Vifa1g00212 199 Gene3D - 118 189 - -
Vifa1g00212 199 Gene3D - 12 76 - -
Vifa1g00212 199 CDD RPS2 13 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 ProSitePatterns Ribosomal protein S2 signature 1. 10 21 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 PANTHER 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR 3 198 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa1g00212 199 Gene3D Helix hairpin bin 77 117 - -
Vifa1g00212 199 FunFam 30S ribosomal protein S2 71 118 - -
Vifa1g00212 199 FunFam 30S ribosomal protein S2, chloroplastic 9 199 - -
Vifa1g00212 199 Pfam Ribosomal protein S2 75 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa1g00212 199 NCBIfam 30S ribosomal protein S2 75 193 IPR005706 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00212 Vifa-Chr1 33786910 33787618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00212 13 196 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 27.128 1.58e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00212 K02967 - cpap:5878370 331.257