Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g00197 | ATGGAGAGAAGTTCAACATGCAATTTGTTTGCAGTTACAAATGAGCTGCAAAATCATAGAACAAAAAAACATTCAATGTACCCTCCTGGCTTTCCAAGAAAGGTATTTGCAGAGGTTATAGGGACATATATGTTGGTGTTTGTGGGGAGTGGGACAGCTGCCATGAGTGCAATAGATGAAAACAAAGTATCAAAATTGGGAGCTTCACTTGCTGCTGGATTCATTGTTACTGTTATGATTTATGCAATTGGACATATCTCTGGTGCACATATGAATCCGGCTGTTTCCTTTGCTTTTGCCACCATTACTCATTTTCCTTGGAAACAGGTTCCATTTTACGTTGCAGCTCAACTCACAGGAGCAATTTCTGCTTCATACACACTTAGAGCATTGTTAGAGCCATCAAAACAGCTAGGTGCAACATCACCTTCTCGATCAAACATTCAAGCACTAATCATAGAAATTGTCACCACTTTCACCATGGTCTTCATCTCCACCGCAGTCGCCACCGACTCAAAAGCAATAGGAGAGCTTGCTGGTGTTGCAGTAGGTTCATCTGTTTGCATAGCAAGCATTGTTGCTGGACCAATATCAGGAGGGTCAATGAACCCAGCAAGGACACTAGGTCCTGCAATTGCTTCTTCATCTTACAAAGGAATTTGGGTCTATATGGTTGGACCAATTACTGGTGCACTTTTAGGTGCATGGTCTTATGTTGTGATTCAAGAGAAAGATCATAAACAAGATATTATAACTTTACAATCTCCTCTTCCACTCAAGCTACACCATGAGATGAATGGGATTGAGCTATAG | 813 | 0.4121 | MERSSTCNLFAVTNELQNHRTKKHSMYPPGFPRKVFAEVIGTYMLVFVGSGTAAMSAIDENKVSKLGASLAAGFIVTVMIYAIGHISGAHMNPAVSFAFATITHFPWKQVPFYVAAQLTGAISASYTLRALLEPSKQLGATSPSRSNIQALIIEIVTTFTMVFISTAVATDSKAIGELAGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIASSSYKGIWVYMVGPITGALLGAWSYVVIQEKDHKQDIITLQSPLPLKLHHEMNGIEL | 270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g00197 | 270 | CDD | MIP | 33 | 241 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PRINTS | Major intrinsic protein family signature | 72 | 96 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PRINTS | Major intrinsic protein family signature | 153 | 171 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PRINTS | Major intrinsic protein family signature | 221 | 241 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PRINTS | Major intrinsic protein family signature | 109 | 128 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PRINTS | Major intrinsic protein family signature | 184 | 206 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PRINTS | Major intrinsic protein family signature | 33 | 52 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | ProSitePatterns | MIP family signature. | 90 | 98 | IPR022357 | - | |
Vifa1g00197 | 270 | Pfam | Major intrinsic protein | 31 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | Gene3D | Glycerol uptake facilitator protein. | 4 | 250 | IPR023271 | - | |
Vifa1g00197 | 270 | SUPERFAMILY | Aquaporin-like | 24 | 247 | IPR023271 | - | |
Vifa1g00197 | 270 | NCBIfam | MIP family channel protein | 37 | 238 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Vifa1g00197 | 270 | PANTHER | AQUAPORIN NIP2-1 | 23 | 245 | IPR034294 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g00197 | Vifa-Chr1 | 32791844 | 32794296 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g00197 | 6 | 248 | Major Intrinsic Protein MIP | AT1G80760 | 43.373 | 9.57e-73 | 223 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g00197 | K09874 | - | gmx:100788071 | 352.443 |