Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00197 ATGGAGAGAAGTTCAACATGCAATTTGTTTGCAGTTACAAATGAGCTGCAAAATCATAGAACAAAAAAACATTCAATGTACCCTCCTGGCTTTCCAAGAAAGGTATTTGCAGAGGTTATAGGGACATATATGTTGGTGTTTGTGGGGAGTGGGACAGCTGCCATGAGTGCAATAGATGAAAACAAAGTATCAAAATTGGGAGCTTCACTTGCTGCTGGATTCATTGTTACTGTTATGATTTATGCAATTGGACATATCTCTGGTGCACATATGAATCCGGCTGTTTCCTTTGCTTTTGCCACCATTACTCATTTTCCTTGGAAACAGGTTCCATTTTACGTTGCAGCTCAACTCACAGGAGCAATTTCTGCTTCATACACACTTAGAGCATTGTTAGAGCCATCAAAACAGCTAGGTGCAACATCACCTTCTCGATCAAACATTCAAGCACTAATCATAGAAATTGTCACCACTTTCACCATGGTCTTCATCTCCACCGCAGTCGCCACCGACTCAAAAGCAATAGGAGAGCTTGCTGGTGTTGCAGTAGGTTCATCTGTTTGCATAGCAAGCATTGTTGCTGGACCAATATCAGGAGGGTCAATGAACCCAGCAAGGACACTAGGTCCTGCAATTGCTTCTTCATCTTACAAAGGAATTTGGGTCTATATGGTTGGACCAATTACTGGTGCACTTTTAGGTGCATGGTCTTATGTTGTGATTCAAGAGAAAGATCATAAACAAGATATTATAACTTTACAATCTCCTCTTCCACTCAAGCTACACCATGAGATGAATGGGATTGAGCTATAG 813 0.4121 MERSSTCNLFAVTNELQNHRTKKHSMYPPGFPRKVFAEVIGTYMLVFVGSGTAAMSAIDENKVSKLGASLAAGFIVTVMIYAIGHISGAHMNPAVSFAFATITHFPWKQVPFYVAAQLTGAISASYTLRALLEPSKQLGATSPSRSNIQALIIEIVTTFTMVFISTAVATDSKAIGELAGVAVGSSVCIASIVAGPISGGSMNPARTLGPAIASSSYKGIWVYMVGPITGALLGAWSYVVIQEKDHKQDIITLQSPLPLKLHHEMNGIEL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00197 270 CDD MIP 33 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Vifa1g00197 270 Pfam Major intrinsic protein 31 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Vifa1g00197 270 SUPERFAMILY Aquaporin-like 24 247 IPR023271 -
Vifa1g00197 270 NCBIfam MIP family channel protein 37 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa1g00197 270 PANTHER AQUAPORIN NIP2-1 23 245 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00197 Vifa-Chr1 32791844 32794296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00197 6 248 Major Intrinsic Protein MIP AT1G80760 43.373 9.57e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00197 K09874 - gmx:100788071 352.443