Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00189 ATGGACATAACTTCAACCCTAACACCAACACCAACCTCATCAACAGCACTAACACCAACACCACTACCAACCATTTTAACAACATCTACAACAACCTTAACAAAATCACCAGATAATGAAACCGAAACACCCACCAAAATCACCACTCCCACTACCGCAACAACAAAGATATCTTCTTTCTCCAACGGTGTTCTCAAACGCCTCCACAACCACCACCATAACCACCACAACAACAACCTTGTCACGGTTACTTACAAAGAATGTCTCAAGAACCACGCGGCAAACTTAGGTGGTCACGCCCTCGACGGCTGCGGCGAATTCATGACATCCCCCACCGCGACATCAGCCGACCCAACATCCTTAAAATGCGCTGCGTGCGGCTGTCACCGAAACTTCCACCGCCGTGAACCTGAAGAGCCACCACTCTCCACCACAACCCATGTAATCGAATATCAACCTCACCACCGTCATCAACCTCTCCCACCGCCACCGTTCTCCACCCGCAGCCCGAATTCCTCCTCCCCACCTCCGATCTCCTCGACTTACTACCCCTCCGCCCCTCACATGCTCCTCGCCCTCTCCACCGCGTTACCGGAAAACGTCTCCGCTCCTAACTCCGCCATGATCTCTCCCGGCTCCCACACCAGAAAACGCTTCCGAACAAAATTCACTCAAGATCAGAAAGAAAAGATGCTGAAATTCGCTGAGAAAGTTGGTTGGAAGATGCAGAAAAAAGACGAAGATTATATCCATGAATTCTGTAACGAAATCTGCGTCGATCGAAGTGTTCTCAAGGTTTGGATGCATAACAACAAGAACACTTTCGCCAAACGCGACAACAACGACAACCTCAACAACAACCTTAACAACATCAACAGTGAGATAAACGTCGGTGTCAAGACTTTCATGCCGCTTGAGAATGAAGAACAAAACATCAATAAAGGTGAAACAAAACTTGAGATTCATACTCATAATCATAATCATCACTACCAGAATGATGTTGGATCAGTGACTGTTCGTGCTAACGGTTCATCTTCTTGA 1041 0.4755 MDITSTLTPTPTSSTALTPTPLPTILTTSTTTLTKSPDNETETPTKITTPTTATTKISSFSNGVLKRLHNHHHNHHNNNLVTVTYKECLKNHAANLGGHALDGCGEFMTSPTATSADPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSTRSPNSSSPPPISSTYYPSAPHMLLALSTALPENVSAPNSAMISPGSHTRKRFRTKFTQDQKEKMLKFAEKVGWKMQKKDEDYIHEFCNEICVDRSVLKVWMHNNKNTFAKRDNNDNLNNNLNNINSEINVGVKTFMPLENEEQNINKGETKLEIHTHNHNHHYQNDVGSVTVRANGSSS 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00189 346 Pfam ZF-HD protein dimerisation region 83 137 IPR006456 -
Vifa1g00189 346 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 136 IPR006456 -
Vifa1g00189 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 59 274 - -
Vifa1g00189 346 MobiDBLite consensus disorder prediction 153 181 - -
Vifa1g00189 346 FunFam Zinc-finger homeodomain protein 2 203 277 - -
Vifa1g00189 346 MobiDBLite consensus disorder prediction 156 171 - -
Vifa1g00189 346 NCBIfam homeobox domain, ZF-HD class 216 273 IPR006455 -
Vifa1g00189 346 SUPERFAMILY Homeodomain-like 206 277 IPR009057 -
Vifa1g00189 346 MobiDBLite consensus disorder prediction 1 50 - -
Vifa1g00189 346 Coils Coil 305 325 - -
Vifa1g00189 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 136 IPR006456 -
Vifa1g00189 346 Gene3D - 203 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00189 Vifa-Chr1 31266552 31267592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00189 26 280 ZF-HD Transcription Factor Family AT5G15210 49.618 1.52e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vifa1g00189 ZF-HD_dimer 1.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00189 - - psat:127128550 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00189 1 31266552 31267592 Vifa1g00189 1 31266552 31267592 ECH
Vifa1g00189 1 31266552 31267592 Vifa1g00189 1 31266552 31267592 PCT