Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00181 ATGAACATGGACATAAACATAGACATGATCATGAATATGGATATAGTCCCAGATTTTCTACACTTTTCCAACTACAGTCACAGTACAACCACACCCACTTCCGAAGACGATACCTTAAACAACACCTGGTCCCCCCTCCTCGATTTCGATTTCTTCACCACCAACCAAGATCACTTCCACGACTTCATTGATTCCCTCACCAACGATGAAGTCACAACCGTTGATCCAAATCTAATCATCCCCGTCTCTTCCGAGGAAGAGGAAGAAGAACAATCATCCATCGGAAACGGATCCAACTCCAATTCCACAACAGACGAAGATAACGACAGAAAGGGCCTCCGTCTTGTCCACCTCCTTATGGCCGCAGCGGAGGCTCTAACCGGCACCAACAAAAGCCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAAGACTTAGTGTCTTCCACTCACGGCACCAACATGGAGAGACTCGCCGCGTATTTCACCGACGCGCTACAAACTCTACTAAACGGCACCGACGGCTCCACCAACCACCACAAGCTTTGTTTACTCACTGCACCCCACCAAACAGACCTCCTCTCCGCCTTCCAGCTTCTTCAAGACATGTCTCCTTACGTCAAGTTCGCTCACTTCACCGCCAACCAAGCCATCCTTGAAGCAGTTACACACGAACGTAGGGTTCATGTTATCGACTATGATATCATGGAAGGAGCCCAATGGGCTTCACTCATTCAATCACTCTCGTCACGGAAAGACGGCGTTCCAGGCCCACATCTCCGGATCACTGCATTATCCAGAAACAAAGAGCGTGGAAGTGGACGGAGGTCCATTGCTACTGTTCAAGAAACCGGGAAAAGATTAACGGCGTTTGCGGCTTCCGTTGGACAGCCGTTTAGTTTTCATCAATGTAGATTGGAAGCAGAGGAAACGTTTAGAGCTTCTTCGTTGAAGCTTGTTCGTGGTGAGGCTTTGGTGTTTAACTGTGTGATGAATTTGCCTCATCTTAGCTACCGGGCTTCGGATTCCGTTGCTTCGTTTTTGAACGGTGCGAAGGAGTTGAGATCGAAGCTTGTGACGTTAGTCGAGGAGGAGGTTGGGCCCGTCAATGAAGCGGGCTTTGGGGGCTTGTTCATGGACTCGCTACATCGTTACTCGGCGATGTATGATTCGCTTGAGGCCGGGTTTCCGATGAATAAATGGGCTCGGACTTTGGTAGAGCAAGTATTTATGGGCCCGAGAATAATGGGCTCAGTGGCTCAGCTTTACATGAGTGGTGAAGAGGAGGGGCTTGACAAGGGCTCTTGGGGGGAGTGGTTGGATGCGGAGGGGTTCAGGGGAGTTAATGTAAGCTATGGTAATCATTGCCAAGCGAAGCTGTTGTTGGGTCTGTTTAATGATGGGTATAGGGTGGAGGAATTGGGGAACAATAAGTTGGTGTTGGGTTGGAAATCAAGGCGTTTGCTTTCTGCTTCTATTTGGACTTGTAACTCACAGTCAGAATCTGATTTTTAG 1515 0.4878 MNMDINIDMIMNMDIVPDFLHFSNYSHSTTTPTSEDDTLNNTWSPLLDFDFFTTNQDHFHDFIDSLTNDEVTTVDPNLIIPVSSEEEEEEQSSIGNGSNSNSTTDEDNDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTHGTNMERLAAYFTDALQTLLNGTDGSTNHHKLCLLTAPHQTDLLSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHVIDYDIMEGAQWASLIQSLSSRKDGVPGPHLRITALSRNKERGSGRRSIATVQETGKRLTAFAASVGQPFSFHQCRLEAEETFRASSLKLVRGEALVFNCVMNLPHLSYRASDSVASFLNGAKELRSKLVTLVEEEVGPVNEAGFGGLFMDSLHRYSAMYDSLEAGFPMNKWARTLVEQVFMGPRIMGSVAQLYMSGEEEGLDKGSWGEWLDAEGFRGVNVSYGNHCQAKLLLGLFNDGYRVEELGNNKLVLGWKSRRLLSASIWTCNSQSESDF 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00181 504 Pfam GRAS domain family 115 495 IPR005202 -
Vifa1g00181 504 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 102 491 IPR005202 -
Vifa1g00181 504 ProSiteProfiles GRAS family profile. 106 495 IPR005202 -
Vifa1g00181 504 MobiDBLite consensus disorder prediction 83 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00181 Vifa-Chr1 29468527 29470041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00181 106 498 GRAS Transcription Factor Family AT3G54220 37.186 3.55e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa1g00181 GRAS 3.7e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00181 - - cit:102620887 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00181 1 29468527 29470041 Vifa1g00181 1 29468527 29470041 ECH