LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g00175	ATGACGAGTCCGTTAAGGGAAGACGAGAAACACGAGCGCGCGATTCGAGCTCTTCTTAGGCTCGAACCCAATCGAACATGCATTAACTGCAACAGTTTGGGACCACAATATGTGTGCACAGATTTCTGGACGTTTGTTTGCACTAATTGTAGCGGAATACACCGTGAACTTACACATCGTGTGAAATCAGTTTCAATGGCTAACTTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGGAATCAGCGTGCAAGAAATGTTTATTTTAAAGAATGGGATGGACAACAGCATTCTTTCCCTGACAGTGATAATGTTAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATAGTACCTCTGACAAACGAGTGAAAAACGGTGGTGACAAAGATGGGTCATATGAAAACAGGAGAGTTGAGGAGGGAGGATCTAAAAGCCCTCCATATGAAGACTCACATGAACCTTGTTATAGTGATAGGTCTAGTCCCGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAAGTTGGTAACTATAAGAGAAGTCTCGGTCGTCCTCCAGTTATCAATGATTGGCATCGTGAAGAACGTAGAAAATCAGATGGAGATTATAAGACGGAAATACCTCTTAGGATAAGTGGACCTCCCAAACGGAACAATGGAAAAGCTGCCAATGCCTCAACACTGACACAGAGAACTGCATCCTCCGGTAGCTTGGTATCCAGTAATGAAAGCCAAGTAAATATTAAGCTTGAGACTACTAAGAACCTTATTGATTTTGATGCTGATCCTATTGCTTCCACAATTCCTCAAGCCCAACAAACTAGCGCGCCTCAACCTGTTTTGCAGCCAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATATTGCTTCTGAGAAGAAAGCAAATCAAAACACCTCAAATTTAAATCCACTTGAATCCGTACTGTCCCAATTGTCTTATTCGACATCTTTATCTTCTCATGCTTCGGGAGTCCAAGGACCTATTCCAGCAGGGGCTCTTAGTTTTGGCAGTTTATCATCTTTCCCATCCAATGATGCTTCGATGCCATCTTCCGGACTGGAAGTTGTATTACCTCATAATAATGTAGGAAAGTGGGCTAGTTCGCAGCATCAGCAACCAATGTTCTCTGCTGTAAATAGTCAGCCATCGCATGTACCTTCTGTACCCACAGGACAGGGATATCCCAACTCACCAATGCCTCATGCATACCATCGTGCTTCGAAGCCAGCCAATGAGGCTTTTAACAGTATTCTTTCTCAAACTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTTCTGAAGATCTGTTCACTGCAAAACACTCTTCCTTCTCTGCTCCAGTTCAAGGTTGGCAGGCGGGTCTTCCCCAGGGCAGGGGCATCTCAATGCAATATAATAATAATGTGGCGCCCATACCAAGTTTTTCGGAGCCATCAAGGTCAACAAATCCATTTGATGTCGGCAGCAAACAAACCCCAGATCAAGACCCAGGTGTATGTGACTTTCATTGA	1572	0.437	MTSPLREDEKHERAIRALLRLEPNRTCINCNSLGPQYVCTDFWTFVCTNCSGIHRELTHRVKSVSMANFTSQEVTALQEGGNQRARNVYFKEWDGQQHSFPDSDNVNRLRDFIKHVYVDRRFTGDSTSDKRVKNGGDKDGSYENRRVEEGGSKSPPYEDSHEPCYSDRSSPGGRSPGYDQESRQVGNYKRSLGRPPVINDWHREERRKSDGDYKTEIPLRISGPPKRNNGKAANASTLTQRTASSGSLVSSNESQVNIKLETTKNLIDFDADPIASTIPQAQQTSAPQPVLQPGNSSDDNWASFDIASEKKANQNTSNLNPLESVLSQLSYSTSLSSHASGVQGPIPAGALSFGSLSSFPSNDASMPSSGLEVVLPHNNVGKWASSQHQQPMFSAVNSQPSHVPSVPTGQGYPNSPMPHAYHRASKPANEAFNSILSQTSAVEVKPSGRTELSEDLFTAKHSSFSAPVQGWQAGLPQGRGISMQYNNNVAPIPSFSEPSRSTNPFDVGSKQTPDQDPGVCDFH	523

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	125	254	-	-
	Vifa1g00175	523	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Vifa1g00175	523	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Vifa1g00175	523	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	125	165	-	-
	Vifa1g00175	523	Gene3D	Arf GTPase activating protein	3	135	IPR038508	-
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	173	187	-	-
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	482	510	-	-
	Vifa1g00175	523	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Vifa1g00175	523	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Vifa1g00175	523	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Vifa1g00175	523	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	482	523	-	-
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	196	215	-	-
	Vifa1g00175	523	PANTHER	ARFGAP/RECO-RELATED	1	210	IPR044820	GO:0005096
	Vifa1g00175	523	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Vifa1g00175	523	CDD	ArfGap_AGFG	12	122	-	-
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	280	302	-	-
	Vifa1g00175	523	MobiDBLite	consensus disorder prediction	229	254	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g00175	Vifa-Chr1	27668652	27673021	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g00175	12	122	C2H2 Transcription Factor Family	AT4G21160	31.897	1.93e-11	63.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g00175	-		-	psat:127116115	862.833