Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00168 ATGGTTAAGACGGAGATCAACAAGATCAACAAAGAGAAATCAAAACCAATGCAACGAAAAACATCATCAACATCAACATCAACATCAACATCAAATGAGATGAAGAGAAAGTACAAAGGAGTTAGAATGAGGAGTTGGGGTTCTTGGGTATCAGAAATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGTTCTTATTCAACTGCTGAAGCTGCAGCTAGAGCCTATGATGCTGCACTTTTATGTCTTAAAGGTTCCTCAGCATCAAATCTTAATTTCCCTTTAGAAAATTCTTCACATTTCATTCCTCAAGACAACATTGCTATGTCACCTAAATCAATCCAAAAAGTAGCTGCAGCTGCGGCCGCTGTATCAGTAGCGGCCGCATCTGCTGCTGGTGTGGATAGTAAGAATGATGAAATTGCTATTAGCACCTTCCCCACATCTCCACCTAATCCTGTGTCATCATCTTCATTGGTTTCATCTCCATCAATGTCATGTTCTCCTACTAATCAAATTGATGATGATGTTTCACTTTTTTCATCTTTTGGGGCCTGCACTAATGATCACCAAGCAACAACAAATGAATCAATGGCTATGAATATGAATATGAATATGAATATGATGGATTGTTGGTATGGTTTTGATGGGTTAGAATCTCCAAAACATTTCGATCAAATGCTAAATGGTTCTTTGTTTGATATTGATTCAACTCAAGTGCTTCTTGATGATTATTATGAAGGTGACATTAATTTGTGGAGCTTCTACTAA 774 0.3721 MVKTEINKINKEKSKPMQRKTSSTSTSTSTSNEMKRKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSASNLNFPLENSSHFIPQDNIAMSPKSIQKVAAAAAAVSVAAASAAGVDSKNDEIAISTFPTSPPNPVSSSSLVSSPSMSCSPTNQIDDDVSLFSSFGACTNDHQATTNESMAMNMNMNMNMMDCWYGFDGLESPKHFDQMLNGSLFDIDSTQVLLDDYYEGDINLWSFY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00168 257 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g00168 257 SUPERFAMILY DNA-binding domain 37 97 IPR016177 GO:0003677
Vifa1g00168 257 Gene3D AP2/ERF domain 36 97 IPR036955 GO:0003700|GO:0006355
Vifa1g00168 257 MobiDBLite consensus disorder prediction 19 34 - -
Vifa1g00168 257 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Vifa1g00168 257 MobiDBLite consensus disorder prediction 1 18 - -
Vifa1g00168 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 201 - -
Vifa1g00168 257 FunFam ethylene-responsive transcription factor ERF014-like 36 97 - -
Vifa1g00168 257 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vifa1g00168 257 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vifa1g00168 257 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Vifa1g00168 257 ProSiteProfiles AP2/ERF domain profile. 37 95 IPR001471 GO:0003700|GO:0006355
Vifa1g00168 257 SMART rav1_2 37 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00168 Vifa-Chr1 26481361 26482134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00168 38 256 AP2-EREBP Transcription Factor Family AT1G21910 43.111 1.86e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g00168 AP2 7.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00168 - - mtr:11436027 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00168 1 26481361 26482134 Vifa1g00168 1 26481361 26482134 ECH