Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00167 ATGAACTTAAGAAAATCTGTGGCTTATAATTTTTATGGTCTGAAAATATGGGTGGCCTTTCTTCTTGTTTTGGTTTTCATCCTTGGGACACAATCTGCCACAACAGTATCTCAAATTCAAATGGAAGCAACCGCCATATTGAATAGTGGATGGTGGGATACATCTTACCAGGAGAGGTCTGATGCACAGAATAATATCAAAAGACGTTGCGATTGGCGCGGTATATTATGCAATGAGGATGGAAGCATCAAAGAAATCAACATGAAAAGTCCTATTCTTGATGCTAAATTTTCAGCACTCAAACTATCTGCTTTTCAAAGTTTAGAAATTCTTGTTTTAAGTTCAATTGGACTGCGAGGGACTGTTCCAGTTGAAATCGGTCTCCTCTCCAAGCTCACTCATCTTGATTTGTCTTCTAACTATCTTGAAGGTAACATACCTCCTTCATTACAGAATCTCACAAAACTCACTCATCTTGATTTGTCTTCTAATATATTTGAAGGTAACATACCTCCTTCATTACAGAATCTCACAAAACTCACTCATCTTGATTTGTCTTATAATATGTTTAAAGGTAACATACCTCCTTCATTACAGAATCTCACAAAACTCACTCATCTTGATTTGTCTTTTAATATGTTTGAAGGTGAAATACCTCCTTCAATAGGCAACTTTAAACAATTAAAGTATTTGGATATCTCTCGTAACAGCTTTCACAGTTCCATTGCCTTACTAGGAAATCTCACACAACTACAAGTGTTAGACATCTCTAGCAACATGATTCAAGGTTCCATTCCTCGTGAGTTGAGGTTCCTAAAAAATCTCACAACATTAAATCTATCTTACAATAGATTTAGAGGTAAGGTGCTTCCATCACTAGAAAATCTCACAAAACTCACTACTCTTGATTTGTCTTGTAATGCACTTCAAGGTGAAATACCTCATTCACTAGGCAATCTTAAACAACTAAAACACTTAGACATCTCTAACAATTTGTTCAACGGTTCCCTGCCATCTAACTTGGATCAACTGTCCAATTTGCGAGTGTTAAATTTAAGTAAAAACTTTATCGGTGGGACCTTTCCAGTTTCCTTAACAATTCTTTCTCAATTAGACACACTTGACATTTCCAACAATTTACTCCTTGGCCCCCTTCCTTCCACAATGTTCCCATTATTCACAAACCTCAGTTACAACCATTTTAGTGGAGAAGTCCCATATTTGTTTGGAAGTTTTGAACAACTTTATCTCAACAATAACAATTTAACAGGAACGATTCCCAAATCTCTCTGTGGTTCCAGTTATGTGGATATTTCCTACAATTGTTTCAAGGATCTCATTCCACATTGTAGTAACATTTATACGAGGAACAAGGATGAATGTATCAACATTTCTTTTAACAAATTCCAACATGGGTCACCTCATAAGACAAAGAATAAAGAAAGGCATTTTATTGTCATAGGTATTTCAATTTTCATTACTCTAACTCTAGCATTCTCACTCCTGATATGCTTTAAACTTCGTCATAGTTCAATAAAAAACAATCATGAAATCACAACGAGAACAAAGAATGGAGATTTTTTTAGTATATGGAATTATGATGGAAAAATTGCATATGATGACATTATAAAAGGAACTGAAGACTTTGACATAAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTATAAGGCACAATTACCATGTGGTAAAGTTGTTGCCTTAAAGAAACTTCACGGATATGAAGCTGAGATTCCATCTTTTGACGAGAGTTTTAGAAATGAAGTGGAAATATTGTGTGAAATTAAGCATCGACATATTGTGAAGCTTTATAGTTTTTGCTTGCACAAAAGAATAATGTTTATAACTTGA 1875 0.3472 MNLRKSVAYNFYGLKIWVAFLLVLVFILGTQSATTVSQIQMEATAILNSGWWDTSYQERSDAQNNIKRRCDWRGILCNEDGSIKEINMKSPILDAKFSALKLSAFQSLEILVLSSIGLRGTVPVEIGLLSKLTHLDLSSNYLEGNIPPSLQNLTKLTHLDLSSNIFEGNIPPSLQNLTKLTHLDLSYNMFKGNIPPSLQNLTKLTHLDLSFNMFEGEIPPSIGNFKQLKYLDISRNSFHSSIALLGNLTQLQVLDISSNMIQGSIPRELRFLKNLTTLNLSYNRFRGKVLPSLENLTKLTTLDLSCNALQGEIPHSLGNLKQLKHLDISNNLFNGSLPSNLDQLSNLRVLNLSKNFIGGTFPVSLTILSQLDTLDISNNLLLGPLPSTMFPLFTNLSYNHFSGEVPYLFGSFEQLYLNNNNLTGTIPKSLCGSSYVDISYNCFKDLIPHCSNIYTRNKDECINISFNKFQHGSPHKTKNKERHFIVIGISIFITLTLAFSLLICFKLRHSSIKNNHEITTRTKNGDFFSIWNYDGKIAYDDIIKGTEDFDIRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEIPSFDESFRNEVEILCEIKHRHIVKLYSFCLHKRIMFIT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00167 624 SMART LRR_sd22_2 272 298 - -
Vifa1g00167 624 SMART LRR_sd22_2 129 155 - -
Vifa1g00167 624 SMART LRR_sd22_2 248 271 - -
Vifa1g00167 624 SMART LRR_sd22_2 177 203 - -
Vifa1g00167 624 SMART LRR_sd22_2 320 343 - -
Vifa1g00167 624 SMART LRR_sd22_2 344 373 - -
Vifa1g00167 624 PANTHER UNNAMED PRODUCT 105 616 - -
Vifa1g00167 624 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 195 289 - -
Vifa1g00167 624 FunFam Nuclear pore complex protein NUP107 39 186 - -
Vifa1g00167 624 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524
Vifa1g00167 624 SMART LRR_typ_2 296 319 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 368 392 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 248 271 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 320 344 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 177 200 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 272 295 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 409 433 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 201 225 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 129 152 IPR003591 -
Vifa1g00167 624 SMART LRR_typ_2 153 176 IPR003591 -
Vifa1g00167 624 ProSiteProfiles Protein kinase domain profile. 549 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00167 624 SUPERFAMILY Protein kinase-like (PK-like) 528 621 IPR011009 -
Vifa1g00167 624 Gene3D Ribonuclease Inhibitor 245 484 IPR032675 -
Vifa1g00167 624 ProSiteProfiles Leucine-rich repeat profile. 131 154 IPR001611 GO:0005515
Vifa1g00167 624 Gene3D Ribonuclease Inhibitor 194 244 IPR032675 -
Vifa1g00167 624 FunFam Piriformospora indica-insensitive protein 2 290 387 - -
Vifa1g00167 624 Gene3D Ribonuclease Inhibitor 42 193 IPR032675 -
Vifa1g00167 624 SUPERFAMILY L domain-like 77 402 - -
Vifa1g00167 624 Gene3D Phosphorylase Kinase; domain 1 509 624 - -
Vifa1g00167 624 FunFam Leucine-rich repeat receptor protein kinase MSP1 511 624 - -
Vifa1g00167 624 Pfam Leucine rich repeat 227 285 IPR001611 GO:0005515
Vifa1g00167 624 Pfam Leucine rich repeat 294 332 IPR001611 GO:0005515
Vifa1g00167 624 ProSiteProfiles Leucine-rich repeat profile. 274 297 IPR001611 GO:0005515
Vifa1g00167 624 Pfam Leucine Rich repeats (2 copies) 178 214 IPR025875 -
Vifa1g00167 624 Pfam Protein kinase domain 554 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00167 624 Pfam Leucine Rich Repeat 155 177 IPR001611 GO:0005515
Vifa1g00167 624 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00167 Vifa-Chr1 25985145 25987091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00167 101 623 Receptor kinase-like Gene Family AT4G08850 35.753 6.07e-86 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa1g00167 Pkinase 7.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00167 - - mtr:11422970 589.726