Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g00167 | ATGAACTTAAGAAAATCTGTGGCTTATAATTTTTATGGTCTGAAAATATGGGTGGCCTTTCTTCTTGTTTTGGTTTTCATCCTTGGGACACAATCTGCCACAACAGTATCTCAAATTCAAATGGAAGCAACCGCCATATTGAATAGTGGATGGTGGGATACATCTTACCAGGAGAGGTCTGATGCACAGAATAATATCAAAAGACGTTGCGATTGGCGCGGTATATTATGCAATGAGGATGGAAGCATCAAAGAAATCAACATGAAAAGTCCTATTCTTGATGCTAAATTTTCAGCACTCAAACTATCTGCTTTTCAAAGTTTAGAAATTCTTGTTTTAAGTTCAATTGGACTGCGAGGGACTGTTCCAGTTGAAATCGGTCTCCTCTCCAAGCTCACTCATCTTGATTTGTCTTCTAACTATCTTGAAGGTAACATACCTCCTTCATTACAGAATCTCACAAAACTCACTCATCTTGATTTGTCTTCTAATATATTTGAAGGTAACATACCTCCTTCATTACAGAATCTCACAAAACTCACTCATCTTGATTTGTCTTATAATATGTTTAAAGGTAACATACCTCCTTCATTACAGAATCTCACAAAACTCACTCATCTTGATTTGTCTTTTAATATGTTTGAAGGTGAAATACCTCCTTCAATAGGCAACTTTAAACAATTAAAGTATTTGGATATCTCTCGTAACAGCTTTCACAGTTCCATTGCCTTACTAGGAAATCTCACACAACTACAAGTGTTAGACATCTCTAGCAACATGATTCAAGGTTCCATTCCTCGTGAGTTGAGGTTCCTAAAAAATCTCACAACATTAAATCTATCTTACAATAGATTTAGAGGTAAGGTGCTTCCATCACTAGAAAATCTCACAAAACTCACTACTCTTGATTTGTCTTGTAATGCACTTCAAGGTGAAATACCTCATTCACTAGGCAATCTTAAACAACTAAAACACTTAGACATCTCTAACAATTTGTTCAACGGTTCCCTGCCATCTAACTTGGATCAACTGTCCAATTTGCGAGTGTTAAATTTAAGTAAAAACTTTATCGGTGGGACCTTTCCAGTTTCCTTAACAATTCTTTCTCAATTAGACACACTTGACATTTCCAACAATTTACTCCTTGGCCCCCTTCCTTCCACAATGTTCCCATTATTCACAAACCTCAGTTACAACCATTTTAGTGGAGAAGTCCCATATTTGTTTGGAAGTTTTGAACAACTTTATCTCAACAATAACAATTTAACAGGAACGATTCCCAAATCTCTCTGTGGTTCCAGTTATGTGGATATTTCCTACAATTGTTTCAAGGATCTCATTCCACATTGTAGTAACATTTATACGAGGAACAAGGATGAATGTATCAACATTTCTTTTAACAAATTCCAACATGGGTCACCTCATAAGACAAAGAATAAAGAAAGGCATTTTATTGTCATAGGTATTTCAATTTTCATTACTCTAACTCTAGCATTCTCACTCCTGATATGCTTTAAACTTCGTCATAGTTCAATAAAAAACAATCATGAAATCACAACGAGAACAAAGAATGGAGATTTTTTTAGTATATGGAATTATGATGGAAAAATTGCATATGATGACATTATAAAAGGAACTGAAGACTTTGACATAAGATATTGCATTGGAACAGGAGCATATGGAAGTGTTTATAAGGCACAATTACCATGTGGTAAAGTTGTTGCCTTAAAGAAACTTCACGGATATGAAGCTGAGATTCCATCTTTTGACGAGAGTTTTAGAAATGAAGTGGAAATATTGTGTGAAATTAAGCATCGACATATTGTGAAGCTTTATAGTTTTTGCTTGCACAAAAGAATAATGTTTATAACTTGA | 1875 | 0.3472 | MNLRKSVAYNFYGLKIWVAFLLVLVFILGTQSATTVSQIQMEATAILNSGWWDTSYQERSDAQNNIKRRCDWRGILCNEDGSIKEINMKSPILDAKFSALKLSAFQSLEILVLSSIGLRGTVPVEIGLLSKLTHLDLSSNYLEGNIPPSLQNLTKLTHLDLSSNIFEGNIPPSLQNLTKLTHLDLSYNMFKGNIPPSLQNLTKLTHLDLSFNMFEGEIPPSIGNFKQLKYLDISRNSFHSSIALLGNLTQLQVLDISSNMIQGSIPRELRFLKNLTTLNLSYNRFRGKVLPSLENLTKLTTLDLSCNALQGEIPHSLGNLKQLKHLDISNNLFNGSLPSNLDQLSNLRVLNLSKNFIGGTFPVSLTILSQLDTLDISNNLLLGPLPSTMFPLFTNLSYNHFSGEVPYLFGSFEQLYLNNNNLTGTIPKSLCGSSYVDISYNCFKDLIPHCSNIYTRNKDECINISFNKFQHGSPHKTKNKERHFIVIGISIFITLTLAFSLLICFKLRHSSIKNNHEITTRTKNGDFFSIWNYDGKIAYDDIIKGTEDFDIRYCIGTGAYGSVYKAQLPCGKVVALKKLHGYEAEIPSFDESFRNEVEILCEIKHRHIVKLYSFCLHKRIMFIT | 624 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g00167 | 624 | SMART | LRR_sd22_2 | 272 | 298 | - | - | |
Vifa1g00167 | 624 | SMART | LRR_sd22_2 | 129 | 155 | - | - | |
Vifa1g00167 | 624 | SMART | LRR_sd22_2 | 248 | 271 | - | - | |
Vifa1g00167 | 624 | SMART | LRR_sd22_2 | 177 | 203 | - | - | |
Vifa1g00167 | 624 | SMART | LRR_sd22_2 | 320 | 343 | - | - | |
Vifa1g00167 | 624 | SMART | LRR_sd22_2 | 344 | 373 | - | - | |
Vifa1g00167 | 624 | PANTHER | UNNAMED PRODUCT | 105 | 616 | - | - | |
Vifa1g00167 | 624 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 195 | 289 | - | - | |
Vifa1g00167 | 624 | FunFam | Nuclear pore complex protein NUP107 | 39 | 186 | - | - | |
Vifa1g00167 | 624 | ProSitePatterns | Protein kinases ATP-binding region signature. | 555 | 577 | IPR017441 | GO:0005524 | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 296 | 319 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 368 | 392 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 248 | 271 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 320 | 344 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 177 | 200 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 272 | 295 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 409 | 433 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 201 | 225 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 129 | 152 | IPR003591 | - | |
Vifa1g00167 | 624 | SMART | LRR_typ_2 | 153 | 176 | IPR003591 | - | |
Vifa1g00167 | 624 | ProSiteProfiles | Protein kinase domain profile. | 549 | 624 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g00167 | 624 | SUPERFAMILY | Protein kinase-like (PK-like) | 528 | 621 | IPR011009 | - | |
Vifa1g00167 | 624 | Gene3D | Ribonuclease Inhibitor | 245 | 484 | IPR032675 | - | |
Vifa1g00167 | 624 | ProSiteProfiles | Leucine-rich repeat profile. | 131 | 154 | IPR001611 | GO:0005515 | |
Vifa1g00167 | 624 | Gene3D | Ribonuclease Inhibitor | 194 | 244 | IPR032675 | - | |
Vifa1g00167 | 624 | FunFam | Piriformospora indica-insensitive protein 2 | 290 | 387 | - | - | |
Vifa1g00167 | 624 | Gene3D | Ribonuclease Inhibitor | 42 | 193 | IPR032675 | - | |
Vifa1g00167 | 624 | SUPERFAMILY | L domain-like | 77 | 402 | - | - | |
Vifa1g00167 | 624 | Gene3D | Phosphorylase Kinase; domain 1 | 509 | 624 | - | - | |
Vifa1g00167 | 624 | FunFam | Leucine-rich repeat receptor protein kinase MSP1 | 511 | 624 | - | - | |
Vifa1g00167 | 624 | Pfam | Leucine rich repeat | 227 | 285 | IPR001611 | GO:0005515 | |
Vifa1g00167 | 624 | Pfam | Leucine rich repeat | 294 | 332 | IPR001611 | GO:0005515 | |
Vifa1g00167 | 624 | ProSiteProfiles | Leucine-rich repeat profile. | 274 | 297 | IPR001611 | GO:0005515 | |
Vifa1g00167 | 624 | Pfam | Leucine Rich repeats (2 copies) | 178 | 214 | IPR025875 | - | |
Vifa1g00167 | 624 | Pfam | Protein kinase domain | 554 | 622 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa1g00167 | 624 | Pfam | Leucine Rich Repeat | 155 | 177 | IPR001611 | GO:0005515 | |
Vifa1g00167 | 624 | Pfam | Leucine Rich Repeat | 131 | 153 | IPR001611 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g00167 | Vifa-Chr1 | 25985145 | 25987091 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g00167 | 101 | 623 | Receptor kinase-like Gene Family | AT4G08850 | 35.753 | 6.07e-86 | 287 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vifa1g00167 | Pkinase | 7.4e-09 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g00167 | - | - | mtr:11422970 | 589.726 |