Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00154 ATGGGTTATCTAAGAAAAGCTTCAAAAACCATAAACCAATCCAATTGCATTTCATTGCTATTCGATTTGAATTTCAATTTCAATTTGACACCATTAACAAGTAGAATAACCCATCAACGATATTCCTTAACGCGTGCACTTTTCTGTACCCAATCACGCCAAAATAGCACCAAAGAGAAAGCTGTTATAGATTTGAGTCAGTACCCTCCAGAGCTTGTGAGAAATTTCTCAATAATTGCGCATGTGGATCATGGAAAATCTACTCTTGCTGACCGACTTTTGGAACTTACGGGGACTATTAAGAAAGGACTTGGGCAGCCTCAGTATCTTGATAAATTGCAGGTGGAGAGAGAAAGGGGAATCACGGTGAAAGCTCAGACAGCAACGATGTTCTATAAGAACATGATAAATGGTGTTGATTGCAGTGATGGAAAGGAATCACCTAATTATCTGCTGAATCTGATCGACACTCCTGGACATGTGGATTTCAGTTATGAAGTGTCTAGGTCACTAGCCGCTTGTCAAGGTGTTCTTTTGGTTGTTGATGCAGCTCAAGGAGTTCAAGCACAAACCGTTGCTAACTTTTACCTTGCCTTTGAATCTAACTTATCAATTATACCTGTCATAAACAAGATAGATCAGCCAACTGCTGATCCCGACCGTGTTAAATCGCAATTGAAATCGATGTTTGATCTTGACCCAAGTGACGCATTGCTAACATCGGCTAAAACTGGGGTGGGTCTTGAACATGTTCTTCCAGCAGTCATAGAGCGTATCCCCCCGCCTCCTGGGAAGAGTGATTCTTCTTTACGTATGCTTTTACTTGATTCGTATTTTGATGAATACAGAGGCGTGATATGCCATGTTGCTGTCGTTGATGGTGCCCTGCGCAAGGGGGATAAGATTTCTTCGGCGGCCACTGGTAAATCATATGAAGCTTTGGATATCGGCATCATGCATCCTGAACTTACTCCTACCGGAATCTTGTTCACCGGACAAGTCGGTTATGTTATAAGTGGCATGCGGTCAACCAAAGAGGCACGTATTGGAGATACAATTTACCATTCACGAAGCACTGTTGATTTAGAACCTCTTCCAGGCTTCAAAGCAGCAAAGCATATGGTTTTTTCTGTGTCTCTGTCGCTAAAGAAACTTAGCACTGCTCTAGGTCTAGGGTTCAGGTGTGGATTTTTAGGCCTTCTGCATATGGACGTTTTTCATCAAAGGCTTGAACAGGAATATGGAGCCCATATTATCTCAACCGTTCCTACCGTGCCTTATATATATGAGTATGCTGATGGAAGTAAATTAGAAGTTCAGAATCCCGCTGCATTACCGTCTAATCCCAAGCAACGAGTGGTAGCGTGTTGGGAACCCACAGTAATAGCTACTATAGTTATTCCTAGTGAGTATGTTGGAGCTGTTATCACCCTTGTCTCCGAGCGTAGGGGTGAACAGTTAGAGTACTCGTTCATTGACAGTCAACGAGTTTTCATGAAGTATCGTCTTCCTTTGAGGAAATTGTTATCGACTTTTATAAGAATTGAAGAGTATAACATCAGGCTATGCATCATTCGATTACGAAGACTCAGATTACCAGGCATCTGA 1608 0.421 MGYLRKASKTINQSNCISLLFDLNFNFNLTPLTSRITHQRYSLTRALFCTQSRQNSTKEKAVIDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGLGQPQYLDKLQVERERGITVKAQTATMFYKNMINGVDCSDGKESPNYLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLSIIPVINKIDQPTADPDRVKSQLKSMFDLDPSDALLTSAKTGVGLEHVLPAVIERIPPPPGKSDSSLRMLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEALDIGIMHPELTPTGILFTGQVGYVISGMRSTKEARIGDTIYHSRSTVDLEPLPGFKAAKHMVFSVSLSLKKLSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHIISTVPTVPYIYEYADGSKLEVQNPAALPSNPKQRVVACWEPTVIATIVIPSEYVGAVITLVSERRGEQLEYSFIDSQRVFMKYRLPLRKLLSTFIRIEEYNIRLCIIRLRRLRLPGI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00154 535 Pfam Elongation factor G C-terminus 458 510 IPR000640 -
Vifa1g00154 535 CDD EF4_II 270 355 - -
Vifa1g00154 535 Gene3D - 71 264 IPR027417 -
Vifa1g00154 535 FunFam Translation factor GUF1, mitochondrial 423 514 - -
Vifa1g00154 535 Gene3D - 423 515 - -
Vifa1g00154 535 Pfam Elongation factor Tu GTP binding domain 73 260 IPR000795 GO:0003924|GO:0005525
Vifa1g00154 535 FunFam Translation factor GUF1, mitochondrial 265 363 - -
Vifa1g00154 535 SUPERFAMILY EF-G C-terminal domain-like 390 426 IPR035647 -
Vifa1g00154 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 284 IPR027417 -
Vifa1g00154 535 SUPERFAMILY Translation proteins 261 363 IPR009000 -
Vifa1g00154 535 Gene3D Elongation Factor G (Translational Gtpase), domain 3 375 422 - -
Vifa1g00154 535 PANTHER TRANSLATION FACTOR GUF1-RELATED 44 378 IPR006297 GO:0005525
Vifa1g00154 535 NCBIfam small GTP-binding protein domain 77 248 IPR005225 GO:0005525
Vifa1g00154 535 SUPERFAMILY EF-G C-terminal domain-like 457 510 IPR035647 -
Vifa1g00154 535 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Vifa1g00154 535 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Vifa1g00154 535 PRINTS GTP-binding elongation factor signature 75 88 IPR000795 GO:0003924|GO:0005525
Vifa1g00154 535 PRINTS GTP-binding elongation factor signature 205 214 IPR000795 GO:0003924|GO:0005525
Vifa1g00154 535 PRINTS GTP-binding elongation factor signature 153 163 IPR000795 GO:0003924|GO:0005525
Vifa1g00154 535 CDD LepA 74 262 - -
Vifa1g00154 535 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 71 263 IPR000795 GO:0003924|GO:0005525
Vifa1g00154 535 FunFam Elongation factor 4 70 264 - -
Vifa1g00154 535 Gene3D Translation factors 265 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00154 Vifa-Chr1 24345660 24349636 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00154 73 214 Eukaryotic Initiation Factors Gene Family AT1G56070 40.972 2.43e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00154 K21594 - gmx:100781092 836.639