Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00152 ATGGAAGCAGTAACATCAGCCATTACAAAAAACAACAACAGTTATGATTCATTCTGCTTGACTAATGCTAAAAATAATAATATGAAAGTGAATAGCATCGATCCTTTGATTTGGGGTGTGGTCGTCGAGGTAATGAAATGGAGCCACTTGGATGAAGTGAAACATATGGTGGAGGAGTACCGAAAGCCAGTGGTTCGTCTTGGTGGCCAGACGCTCACAATTTCTCAGGTGGCTGACATTGCCTCAAATAACCATGGTGTGAAAGTTGAGTTGTCAGAATCTGTAGAAGAACTCATCAGGTTTTTAAATGTCGGAATATTTGAAAGTGGAACCGAGTCAAACCACACATTACCACACACAACAACAAGAGTCGCCATGTTAGTGAGAATCAACACACTTCTCCAAGGCTATTCTAGAATTATATTTGAAATCCTGGAAGCCATAACCAAGTTCATTAACAAGAACATCACCCCATGTTTACCGCTTCGAGGTACTATCACAGCTTCAGGAGATTTAGTCTCTCTTACTTATATGGCTGGTTTACTAACAGAAAGACCAAATTCCAAAGCGCTTGGACCTTCTGGAGATATACTTAATGTCGAAAAGGCTTTTCAATTGACTGGTATCAATGATAATTTCTTTGAATTACAACCTAAGGAAGGACTTGCACTTATTCATATACAATTAAATATATTTGGCCATTTGAACCATGTGTTAGAACTAATAACAGCCATGGATGAACCAAAGAAAAGTAGAAAGAATAAGAGAAAGAAGAGAAGAAATTATGAGAACTTGAAGCTACGAAAGCTTAATGATCATTACATCATAGTTGTGTTTATATAG 843 0.3749 MEAVTSAITKNNNSYDSFCLTNAKNNNMKVNSIDPLIWGVVVEVMKWSHLDEVKHMVEEYRKPVVRLGGQTLTISQVADIASNNHGVKVELSESVEELIRFLNVGIFESGTESNHTLPHTTTRVAMLVRINTLLQGYSRIIFEILEAITKFINKNITPCLPLRGTITASGDLVSLTYMAGLLTERPNSKALGPSGDILNVEKAFQLTGINDNFFELQPKEGLALIHIQLNIFGHLNHVLELITAMDEPKKSRKNKRKKRRNYENLKLRKLNDHYIIVVFI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00152 280 PANTHER HISTIDINE AMMONIA-LYASE 30 96 IPR001106 -
Vifa1g00152 280 SUPERFAMILY L-aspartase-like 34 225 IPR008948 GO:0003824
Vifa1g00152 280 Pfam Aromatic amino acid lyase 91 225 IPR001106 -
Vifa1g00152 280 Gene3D - 24 95 IPR024083 -
Vifa1g00152 280 Gene3D - 96 226 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00152 Vifa-Chr1 24183885 24184727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00152 4 226 Monolignol Biosynthesis Gene Families AT2G37040 53.933 1.20e-86 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00152 K10775 - gmx:100788438 281.567