Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00133 ATGAAATCATGTCTTGATTCCACTTTCAGTTTGAATGTGAGAAAAACATGCATAGATTTGTACCAGTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCCAAGGACTGCCTTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCAACGGGACGAAGTGGTTATCAAATATTCCTCAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCGTTGATGACTGACAATAATAAACAGAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCCGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 825 0.4097 MKSCLDSTFSLNVRKTCIDLYQFYLEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARFPASQTATGSTKAKRKQGSTSSLSQLMDDGDYPTEAEISKDCLTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKQKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00133 274 MobiDBLite consensus disorder prediction 57 88 - -
Vifa1g00133 274 Pfam HMG (high mobility group) box 130 187 IPR009071 -
Vifa1g00133 274 SMART hmgende2 127 196 IPR009071 -
Vifa1g00133 274 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 126 194 IPR009071 -
Vifa1g00133 274 Pfam ARID/BRIGHT DNA binding domain 14 59 IPR001606 GO:0003677
Vifa1g00133 274 SUPERFAMILY ARID-like 13 52 IPR036431 GO:0003677
Vifa1g00133 274 CDD ARID 18 61 - -
Vifa1g00133 274 MobiDBLite consensus disorder prediction 57 85 - -
Vifa1g00133 274 CDD HMG-box_SF 130 185 - -
Vifa1g00133 274 ProSiteProfiles ARID domain profile. 1 96 IPR001606 GO:0003677
Vifa1g00133 274 SUPERFAMILY HMG-box 112 185 IPR036910 -
Vifa1g00133 274 Gene3D High mobility group box domain 112 192 IPR036910 -
Vifa1g00133 274 Gene3D - 8 69 IPR036431 GO:0003677
Vifa1g00133 274 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 81 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00133 Vifa-Chr1 21663802 21665081 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g00133 HMG_box 1.1e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00133 - - mtr:120577736 276.559