Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00131 ATGTGGTGGATGATCTTTTACTACTTTGGGCTACGTGGATTGAGGCGTGACCATTCTAAGGCACTTTTGTGGTTCTTGAAGGCAGTGGAGAAGGGAGAGCCTCGCTCCATGGAGCTTCTCGGAGAGATATATGCCAGGGGAGCCGGTGTTGAGAGGAACTATACAAAAGCCTTTGAATGGCTTACTCTAGCATCTAAGCATCACCTCTACTCTGCTTATAATGGGATTGGTTATTTGTATGTCAAAGGCTATGAAGTCGACAGCAAAAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGAAAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTTTCTCAAGGGGATTGGAGTGAAAAGAGATGTGCGGTTGGCATGTAAATATTTTATAGTGGCTGCCAACAATGGTCAACCAAAGGCTTTCTACCAACTTGCAAAGATTTTTCATCTTGGTGTTGGCTTCAAGAAGAACGTTCCATTGGGATCCACGCTTTACCCTCGAAAGAAGGGAAACTTGTCGAATATCGAGGTAGTGTTGCATCGTCATATGGATGGGGAAACCACTGAATATGAAGAATTAAGAGCTGAAAACGGTGTTTTTTCTCTCTCAAGGAGAGTTGAGGCTCAAGAGAGTTTGTCGGTAGCCATAGAGGCTCACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACTAAAGAAAATAATCAAGCATGCAAAAAACTTTTAAAACTCATGGGAGTGCCCGTTGTTGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGGTGCTCTTTGCAAAGTTGGAAAAGCAACTTCACATCTGCTCCTCTACCGGAGAGGATAG 867 0.4337 MWWMIFYYFGLRGLRRDHSKALLWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYEVDSKNYTKAKEYFEKAAENDEVGGHYNLGVMFLKGIGVKRDVRLACKYFIVAANNGQPKAFYQLAKIFHLGVGFKKNVPLGSTLYPRKKGNLSNIEVVLHRHMDGETTEYEELRAENGVFSLSRRVEAQESLSVAIEAHNKEDIEKFSKRTVKVTKENNQACKKLLKLMGVPVVEAPSEAEAQCGALCKVGKATSHLLLYRRG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00131 288 SMART sel1 6 33 IPR006597 -
Vifa1g00131 288 SMART sel1 34 69 IPR006597 -
Vifa1g00131 288 SMART sel1 107 142 IPR006597 -
Vifa1g00131 288 SMART sel1 70 106 IPR006597 -
Vifa1g00131 288 Gene3D - 186 285 - -
Vifa1g00131 288 SUPERFAMILY PIN domain-like 205 278 IPR029060 -
Vifa1g00131 288 ProSitePatterns XPG protein signature 2. 255 269 IPR019974 GO:0016788
Vifa1g00131 288 SUPERFAMILY HCP-like 7 104 - -
Vifa1g00131 288 SUPERFAMILY HCP-like 70 168 - -
Vifa1g00131 288 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 5 170 IPR044623 GO:0030433
Vifa1g00131 288 Gene3D Tetratricopeptide repeat domain 3 69 IPR011990 GO:0005515
Vifa1g00131 288 Gene3D Tetratricopeptide repeat domain 70 174 IPR011990 GO:0005515
Vifa1g00131 288 Pfam Sel1 repeat 6 32 IPR006597 -
Vifa1g00131 288 Pfam Sel1 repeat 110 141 IPR006597 -
Vifa1g00131 288 Pfam Sel1 repeat 71 105 IPR006597 -
Vifa1g00131 288 Pfam Sel1 repeat 35 67 IPR006597 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00131 Vifa-Chr1 21647166 21648995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00131 208 277 Core DNA Replication Machinery Family AT5G26680 72.857 3.07e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00131 K14026 - psat:127101456 329.331