Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00129 ATGGGAATGCGCAGTACTTCTCCTCCTATTTCGTCTTCGTCTTCTTCTTGTTGCTCTCGTTTCTGGTCCTCCGCGCTCCGATCCAAACGCTTAGCCTCTCCGGAGGAGAAGGCAGCTCGCGATAGCTCCGGCCATGGTCTCTCCCGTCGACTAGGTGTCTTCGACCTAATTCTCCTCGGGATCGGCGCTTCCATCGGAGCCGGTATCTTCGTCGTCACCGGTACCGTTGCTCATGACGCCGGACCTGGGGTAACAATAAGTTTTATACTTGCTGGAGCATCCTGTGTTATAAATGCACTCTGTTATGCGGAGCTAGCTTCTCGATTCCCTGCTGTTGTTGGAGGAGCGTATCTATACACCTATACGGCTTTTAACGAACTTACCGCTTTTCTTGTTTTTTCACAATTAATGCTTGACTATCATATTGGGGCAGCTAGCATAGCAAGAAGCTTAGCAAGTTATGTAGTATCGTTTCTTGAAATCTTCCCTGTTTTCAAAGATAACATTCCAAACTGGATTGGACACGGTGAAAACATTGGAAGCGTGCTATCCATCAATGCCTTAGCTCCGGTTCTCTTAATGCTTCTCACTTTAATTCTCTGTCTTGGTGTTAAAGAATCATCGACTGTGAATTCGTTTATGACAGTAACCAAGGTAATCATTGTTATTGTTGTCATTGTTGCTGGAGCTTTTGAGGTTGATGTTTCCAACTGGTCTCCTTTTGCTCCAAATGGTGTAAGAAGTATCTTAACTGGAGCTACTGTCGTCTTCTTTGCATACGTTGGATTCGACGCGGTTGCTAATTCAGCTGAAGAATCTAAGAAGCCACAGCGGGATTTGCCAATAGGCATTATTGGAAGCCTCTTGGTATGTATTGCACTATACATTGCAGTATGCTTAGTAATTACTGGAATGGTTCCATTCAATCTTCTAGGAGAAGACGCTCCTTTGGCGGAAGCTTTTAAATCTAAAGGACTAAAATTTGTTTCTGTTCTGATTAGTATTGGTGCAATTGCTGGACTTACAACTGCACTCCTTGTTGGCCTCTATGTTCAGTCTCGGCTATATCTTGGGCTTGGCAGGGACGGTTTACTACCCGCAATATTTGCTAAAGTTCACCCCAGACGCCACACCCCTATTAATTCTCAGATTTGGGCTGGCTGTGTTGCCAGTATTATGGCTGGGCTGTTTAATGTGCACACGCTATCACACATTCTTTCCGTTGGTACTCTGACTGGCTATTCAGTTGTCTCGGCATGCGTTGTTGTACTTCGCTGGAAGGATAAGACAAGTGGCCAAGTATCGCCTTCAGCTAAGCGAGAAGGTGTACTTTGCCTCATCGTTGTTGCTCTTTCGGGATTTACTGCAGGGCTCTTGTTCCGCTATGAAGTATCAATTATCTTTGTGATTGTGGCTATAGTTGTTGCAGTTGGTGCTTCTCTTGCTCTTCTTTTCCGCCAGAATACACGTCGCAACATGAAGAAAACAAGTGGTCTCTTCACGAGCAGGAGGGTACGGCATGGCTTCATAAGGAGAAGATTAAGTACTGAGGTTTATGGAGATTCGGTTGGGTTTTCTTGCCCAGGAGTTCCTATTGTGCCAAATATTTGCATCTTCTTTAACATGTTCTTATTTGGCCAGTTACATCATGAAGCATGGGTGAGATTTGTGATTCTAAGTTTTATTATGGTTGGCGTTTATGCAATATATGGCCAGTATCATGGGGACCCCAATGCAGATGAGACTATTATTTATCACGAAGCTCCGGCGGAATAA 1776 0.4459 MGMRSTSPPISSSSSSCCSRFWSSALRSKRLASPEEKAARDSSGHGLSRRLGVFDLILLGIGASIGAGIFVVTGTVAHDAGPGVTISFILAGASCVINALCYAELASRFPAVVGGAYLYTYTAFNELTAFLVFSQLMLDYHIGAASIARSLASYVVSFLEIFPVFKDNIPNWIGHGENIGSVLSINALAPVLLMLLTLILCLGVKESSTVNSFMTVTKVIIVIVVIVAGAFEVDVSNWSPFAPNGVRSILTGATVVFFAYVGFDAVANSAEESKKPQRDLPIGIIGSLLVCIALYIAVCLVITGMVPFNLLGEDAPLAEAFKSKGLKFVSVLISIGAIAGLTTALLVGLYVQSRLYLGLGRDGLLPAIFAKVHPRRHTPINSQIWAGCVASIMAGLFNVHTLSHILSVGTLTGYSVVSACVVVLRWKDKTSGQVSPSAKREGVLCLIVVALSGFTAGLLFRYEVSIIFVIVAIVVAVGASLALLFRQNTRRNMKKTSGLFTSRRVRHGFIRRRLSTEVYGDSVGFSCPGVPIVPNICIFFNMFLFGQLHHEAWVRFVILSFIMVGVYAIYGQYHGDPNADETIIYHEAPAE 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00129 591 Gene3D Amino acid/polyamine transporter I 47 507 - -
Vifa1g00129 591 PIRSF AA_transporter 508 589 - -
Vifa1g00129 591 PIRSF AA_transporter 34 499 - -
Vifa1g00129 591 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vifa1g00129 591 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 42 574 - -
Vifa1g00129 591 Pfam C-terminus of AA_permease 525 574 IPR029485 -
Vifa1g00129 591 Pfam Amino acid permease 51 460 IPR002293 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00129 Vifa-Chr1 21547750 21552236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00129 13 494 Organic Solute Cotransporters AT1G05940 70.842 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00129 K03294 - gmx:100804988 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00129 1 21547750 21552236 Vifa1g00129 1 21547750 21552236 ECH
Vifa1g05985 1 936957691 936959241 Vifa1g00129 1 21547750 21552236 PCT