Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00128 ATGAGCCGAAGAGTGAGGAGGAAAGTGGCAAGAAAAGGAAAAGGGAATGTGGTTTCGAGTTTCCCTGGTGTTGGAGACGAGGTTGCGGATTTGGAGCCCGGAGGAGTTGTTGATTGGAGGAGCTTACCCGATGATACAATAATTCAGCTACTGTCGTGTCTGAGTTATCGAGACCGAGCTAGTTTATCAGCAACTTGTAAGACATGGAGGGTTCTCGGAAACTCTCCGTGTTTGTGGACTTCTTTGGATCTTCGTTCGCACAAGTTTGATGCCAATGTTGCATCTTCACTTGCTTCTAGATGTGTGCATCTACAGAAGCTTAGGTTTCGTGGGGCGGAGTCTGCTGATGTACTGCTTCATCTTCGAGCTAAGAACTTGCGTGAAATAAGCGGGGATAGTTGTAGGAAGATGACTGATGCAACTCTTGCTGTTGTTGCAGCCCGGCACGAGTTACTTGAGAGTCTTCAGCTTGGACCGGATTTTTGTGACAAAGTCACTAGTGATGCTATAAAATCAATAGCTCATTGCTGTCCTAATTTGAATAAACTTAGGCTCTCAGGCATTAGGGATGTAAATGCTGATGCTATTAATGCATTGGCTAACTACTGTCCTAAGCTGAGCGATATTGGGTTCATTGACTGCCTGAGTGTTGATGAACTTGCATTGGGAAATGTGCAATCCGTTCGTTTCCTTTCTGTTGCGGGGACACCAAGTATGAAGTGGAGTACGGTTACCCATCTTTGGCATAAGCTTCCGAATCTGATTGGATTAGATGTTTCAAGAACCGATATTGGTCCCTCTGCTGTTTCAAGATTGTTATCCTCATCAACAAATTTGAGGGTTTTGATTGCTTTGAACTGTCCTATCTTTGAAGAAGAGACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTGTTGATTTCCCTATCCACCGACATTTTTAAAGGACTAGCTTCTTTATTTTTTGATAATACAAATAGAGGGAAGAATGTGTTTTTGAACTGGAGGACTTCAAAGAGTAATAATGATAAGGGTCTTGATGAAATTATACCTTGGCTTGAATGGATGCTATCACATATACTTTTGCGTTCTGCTGAGAGCCCTCAACAGGGAGGTCTTGATAATTTCTGGGTTGAACAAGGTGCGTCGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATCGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATTCGCCTCCTTCTCGGGCTTGCAAAATCTTACAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCTATTGCAAATTTGTCCGTGAATGCCAATGTGGCCAAGGCGGTTGCAGAAGAGGGTGGGATTGAGATCCTCGCTAGTTTGGCTAGGTCAATGAACAAACTTGTGGCTGAAGAGGCTGCTGGAGGATTATGGAACCTCTCTGTTGGAGAGGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAGTACAAGCTTTAGTGGATCTTATATTCAAGTGGTCTTCTACCGGAGATGGAGTTTTAGAACGCGCAGCTGGTGCATTGGCTAATTTGGCTGCTGATGACAAGTGTAGTACAGAGGTTGCATTGGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAATTGTAAATACGAGGGAGTACAAGAGCAGGCTGCTCGTGCAATGGCTAATTTAGCTGCTCATGGAGATAGCAACAGCAATAATGCTGCTGTCGGACAAGAAGCGGGTGCTCTTGAGGCTCTCGTTCAACTTACACGTTCTCCCCATGAGGGTGTTAGGCAAGAAGCTGCCGGTGCACTTTGGAATTTGTCATTTGACGATAGAAACCGAGAAGCCATTGCAGCAGCTGGTGGAGTTCAAGCTTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCTTCCCCCGGGCTTCAAGAGAGGGCTGCTGGTGCTCTATGGGGACTGTCAGTTTCTGAAACCAATAGCATTGCCATTGGACGAGAAGGAGGTGTCGCTCCTCTGATTGCATTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACGGCAGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGCAATGCTTTACGAATAGTGGAGGAAGGTGGAGTAGCTGCACTTGTTGATCTCTGTTCTTCATCAGTGTCAAAAATGGCACGGTTTATGGCGGCATTGGCTTTGGCCTACATGTTTGATGGGCGCTACCATAATGTGTTTTGCAGAATGGATGAATTTGCTTTAGTTGGAACCTTGTCGGAAAGTGTTTCTAAGAGTGTTGGCTTGGATGGAGCCAGAAGGATGGCTCTGAAGCACATCGAAGCATTTGTCCGTATGTTTTCTAATCAACAAGCATTTGCGGCCGCTGCTTCTTCGTCAGCTCCTGCAGCACTAGCCCAAGTTACTGAAAGTGCTCGTATTCAAGAAGCTGGACATCTTAGATGCAGTGGTGCTGAAGTTGGAAGATTTGTTGCTATGCTACGGAATCCATCATCGATACTCAAAGCTTGTGCAGCATTTGCTCTTCTTCAGTTTACGATTCCTGGTGGACGACATGCGGTACACCATGCCCGTCTCATGCAGAACGCAGGTGCAGCAAGAGTTCTGCGCAGTGCGGCCGCAGCAGCAACCGCACCTCTCGAAGCAAAAATCTTCGCCAGGATTGTTCTTCGTAATCTCGAGTATCATCACGTAGAGCATACTGTGTAG 2781 0.4621 MSRRVRRKVARKGKGNVVSSFPGVGDEVADLEPGGVVDWRSLPDDTIIQLLSCLSYRDRASLSATCKTWRVLGNSPCLWTSLDLRSHKFDANVASSLASRCVHLQKLRFRGAESADVLLHLRAKNLREISGDSCRKMTDATLAVVAARHELLESLQLGPDFCDKVTSDAIKSIAHCCPNLNKLRLSGIRDVNADAINALANYCPKLSDIGFIDCLSVDELALGNVQSVRFLSVAGTPSMKWSTVTHLWHKLPNLIGLDVSRTDIGPSAVSRLLSSSTNLRVLIALNCPIFEEETSFSASKYKNKLLISLSTDIFKGLASLFFDNTNRGKNVFLNWRTSKSNNDKGLDEIIPWLEWMLSHILLRSAESPQQGGLDNFWVEQGASLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSYREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILASLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGVQALVDLIFKWSSTGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKYEGVQEQAARAMANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSETNSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVAALVDLCSSSVSKMARFMAALALAYMFDGRYHNVFCRMDEFALVGTLSESVSKSVGLDGARRMALKHIEAFVRMFSNQQAFAAAASSSAPAALAQVTESARIQEAGHLRCSGAEVGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAVHHARLMQNAGAARVLRSAAAAATAPLEAKIFARIVLRNLEYHHVEHTV 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00128 926 SMART fbox_2 42 82 IPR001810 GO:0005515
Vifa1g00128 926 FunFam Protein ARABIDILLO 2 355 503 - -
Vifa1g00128 926 SUPERFAMILY RNI-like 57 293 - -
Vifa1g00128 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Vifa1g00128 926 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Vifa1g00128 926 Gene3D - 525 590 IPR011989 -
Vifa1g00128 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 687 IPR000225 GO:0005515
Vifa1g00128 926 SUPERFAMILY ARM repeat 378 746 IPR016024 -
Vifa1g00128 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 556 IPR000225 GO:0005515
Vifa1g00128 926 Pfam F-box-like 39 85 IPR001810 GO:0005515
Vifa1g00128 926 Gene3D Ribonuclease Inhibitor 33 310 IPR032675 -
Vifa1g00128 926 Gene3D - 591 680 IPR011989 -
Vifa1g00128 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Vifa1g00128 926 PANTHER PROTEIN ARABIDILLO 1 1 923 - -
Vifa1g00128 926 Pfam Armadillo/beta-catenin-like repeat 593 629 IPR000225 GO:0005515
Vifa1g00128 926 Pfam Armadillo/beta-catenin-like repeat 554 585 IPR000225 GO:0005515
Vifa1g00128 926 Pfam Armadillo/beta-catenin-like repeat 678 714 IPR000225 GO:0005515
Vifa1g00128 926 Pfam Armadillo/beta-catenin-like repeat 501 543 IPR000225 GO:0005515
Vifa1g00128 926 Pfam Armadillo/beta-catenin-like repeat 464 498 IPR000225 GO:0005515
Vifa1g00128 926 Pfam Armadillo/beta-catenin-like repeat 631 673 IPR000225 GO:0005515
Vifa1g00128 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Vifa1g00128 926 Gene3D - 374 524 IPR011989 -
Vifa1g00128 926 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Vifa1g00128 926 Gene3D - 681 925 IPR011989 -
Vifa1g00128 926 SMART arm_5 631 674 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 716 757 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 418 458 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 500 543 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 544 585 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 675 715 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 459 499 IPR000225 GO:0005515
Vifa1g00128 926 SMART arm_5 590 630 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00128 Vifa-Chr1 21182997 21196112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00128 502 762 U-box Gene Family AT2G23140 29.771 1.90e-17 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00128 - - ccaj:109792060 1511.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00128 1 21182997 21196112 Vifa1g00128 1 21182997 21196112 ECH