Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00127 ATGAGCCGAAGAGTGAGGAGGAAAGTGGCAAGAAAAGGAAAAGGGAATGTGGTTTCGAGTTTCCCTGGTGTTGGAGACGAGGTTGCGGATTTGGAGCCCGGAGGAGTTGTTGATTGGAGGAGCTTACCCGATGATACAATAATTCAGCTACTGTCGTGTCTGAGTTATCGAGACCGAGCTAGTTTATCAGCAACTTGTAAGACATGGAGGGTTCTCGGAAACTCTCCGTGTTTGTGGACTTCTTTGGATCTTCGTTCGCACAAGTTTGATGCCAATGTTGCATCTTCACTTGCTTCTAGATGTGTGCATCTACAGAAGCTTAGGTTTCGTGGGGCGGAGTCTGCTGATGTACTGCTTCATCTTCGAGCTAAGAACTTGCGTGAAATAAGCGGGGATAGTTGTAGGAAGATGACTGATGCAACTCTTGCTGTTGTTGCAGCCCGGCACGAGTTACTTGAGAGTCTTCAGCTTGGACCGGATTTTTGTGACAAAGTCACTAGTGATGCTATAAAATCAATAGCTCATTGCTGTCCTAATTTGAATAAACTTAGGCTCTCAGGCATTAGGGATGTAAATGCTGATGCTATTAATGCATTGGCTAACTACTGTCCTAAGCTGAGCGATATTGGGTTCATTGACTGCCTGAGTGTTGATGAACTTGCATTGGGAAATGTGCAATCCGTTCGTTTCCTTTCTGTTGCGGGGACACCAAGTATGAAGTGGAGTACGGTTACCCATCTTTGGCATAAGCTTCCGAATCTGATTGGATTAGATGTTTCAAGAACCGATATTGGTCCCTCTGCTGTTTCAAGATTGTTATCCTCATCAACAAATTTGAGGGTTTTGATTGCTTTGAACTGTCCTATCTTTGAAGAAGAGACTAGCTTTTCTGCTAGTAAATATAAAAACAAGTTGTTGATTTCCCTATCCACCGACATTTTTAAAGGACTAGCTTCTTTATTTTTTGATAATACAAATAGAGGGAAGAATGTGTTTTTGAACTGGAGGACTTCAAAGAGTAATAATGATAAGGGTCTTGATGAAATTATACCTTGGCTTGAATGGATGCTATCACATATACTTTTGCGTTCTGCTGAGAGCCCTCAACAGGGAGGTCTTGATAATTTCTGGGTTGAACAAGGTGCGTCGCTCTTGCTTAGTCTAATGCAGAGTTCTCAAGAGGATGTTCAGGAGAGGGCAGCCACAGGTCTTGCAACTTTTGTTGTAATTGATGATGAAAATGCTAGCATCGATTGTGGAAGGGCTGAAGCAGTTATGCGAGATGGTGGCATTCGCCTCCTTCTCGGGCTTGCAAAATCTTACAGGGAAGGGCTTCAGTCTGAGGCAGCTAAGGCTATTGCAAATTTGTCCGTGAATGCCAATGTGGCCAAGGCGGTTGCAGAAGAGGGTGGGATTGAGATCCTCGCTAGTTTGGCTAGGTCAATGAACAAACTTGTGGCTGAAGAGGCTGCTGGAGGATTATGGAACCTCTCTGTTGGAGAGGAGCACAAGGGTGCCATTGCTGAAGCTGGTGGAGTACAAGCTTTAGTGGATCTTATATTCAAGTGGTCTTCTACCGGAGATGGAGTTTTAGAACGCGCAGCTGGTGCATTGGCTAATTTGGCTGCTGATGACAAGTGTAGTACAGAGGTTGCATTGGCAGGAGGTGTACATGCTCTAGTGATGCTTGCTCGTAATTGTAAATACGAGGGAGTACAAGAGCAGGCTGCTCGTGCAATGGCTAATTTAGCTGCTCATGGAGATAGCAACAGCAATAATGCTGCTGTCGGACAAGAAGCGGGTGCTCTTGAGGCTCTCGTTCAACTTACACGTTCTCCCCATGAGGGTGTTAGGCAAGAAGCTGCCGGTGCACTTTGGAATTTGTCATTTGACGATAGAAACCGAGAAGCCATTGCAGCAGCTGGTGGAGTTCAAGCTTTGGTTGCTCTTGCCCAATCTTGTTCTAATGCTTCCCCCGGGCTTCAAGAGAGGGCTGCTGGTGCTCTATGGGGACTGTCAGTTTCTGAAACCAATAGCATTGCCATTGGACGAGAAGGAGGTGTCGCTCCTCTGATTGCATTGGCACGGTCTGAAGCAGAGGATGTTCATGAAACGGCAGCAGGAGCACTATGGAATCTTGCTTTCAACCCTGGCAATGCTTTACGAATAGTGGAGGAAGGTGGAGTAGCTGCACTTGTTGATCTCTGTTCTTCATCAGTGTCAAAAATGGCACGGTTTATGGCGGCATTGGCTTTGGCCTACATGTTTGATGGGCGAATGGATGAATTTGCTTTAGTTGGAACCTTGTCGGAAAGTGTTTCTAAGAGTGTTGGCTTGGATGGAGCCAGAAGGATGGCTCTGAAGCACATCGAAGCATTTGTCCGTATGTTTTCTAATCAACAAGCATTTGCGGCCGCTGCTTCTTCGTCAGCTCCTGCAGCACTAGCCCAAGTTACTGAAAGTGCTCGTATTCAAGAAGCTGGACATCTTAGATGCAGTGGTGCTGAAGTTGGAAGATTTGTTGCTATGCTACGGAATCCATCATCGATACTCAAAGCTTGTGCAGCATTTGCTCTTCTTCAGTTTACGATTCCTGGTGGACGACATGCGGTACACCATGCCCGTCTCATGCAGAACGCAGGTGCAGCAAGAGTTCTGCGCAGTGCGGCCGCAGCAGCAACCGCACCTCTCGAAGCAAAAATCTTCGCCAGGATTGTTCTTCGTAATCTCGAGTATCATCACGTAGAGCATACTGTGTAG 2760 0.4627 MSRRVRRKVARKGKGNVVSSFPGVGDEVADLEPGGVVDWRSLPDDTIIQLLSCLSYRDRASLSATCKTWRVLGNSPCLWTSLDLRSHKFDANVASSLASRCVHLQKLRFRGAESADVLLHLRAKNLREISGDSCRKMTDATLAVVAARHELLESLQLGPDFCDKVTSDAIKSIAHCCPNLNKLRLSGIRDVNADAINALANYCPKLSDIGFIDCLSVDELALGNVQSVRFLSVAGTPSMKWSTVTHLWHKLPNLIGLDVSRTDIGPSAVSRLLSSSTNLRVLIALNCPIFEEETSFSASKYKNKLLISLSTDIFKGLASLFFDNTNRGKNVFLNWRTSKSNNDKGLDEIIPWLEWMLSHILLRSAESPQQGGLDNFWVEQGASLLLSLMQSSQEDVQERAATGLATFVVIDDENASIDCGRAEAVMRDGGIRLLLGLAKSYREGLQSEAAKAIANLSVNANVAKAVAEEGGIEILASLARSMNKLVAEEAAGGLWNLSVGEEHKGAIAEAGGVQALVDLIFKWSSTGDGVLERAAGALANLAADDKCSTEVALAGGVHALVMLARNCKYEGVQEQAARAMANLAAHGDSNSNNAAVGQEAGALEALVQLTRSPHEGVRQEAAGALWNLSFDDRNREAIAAAGGVQALVALAQSCSNASPGLQERAAGALWGLSVSETNSIAIGREGGVAPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVAALVDLCSSSVSKMARFMAALALAYMFDGRMDEFALVGTLSESVSKSVGLDGARRMALKHIEAFVRMFSNQQAFAAAASSSAPAALAQVTESARIQEAGHLRCSGAEVGRFVAMLRNPSSILKACAAFALLQFTIPGGRHAVHHARLMQNAGAARVLRSAAAAATAPLEAKIFARIVLRNLEYHHVEHTV 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00127 919 Gene3D - 353 483 IPR011989 -
Vifa1g00127 919 Gene3D - 569 677 IPR011989 -
Vifa1g00127 919 Pfam Armadillo/beta-catenin-like repeat 631 673 IPR000225 GO:0005515
Vifa1g00127 919 Pfam Armadillo/beta-catenin-like repeat 554 585 IPR000225 GO:0005515
Vifa1g00127 919 Pfam Armadillo/beta-catenin-like repeat 593 629 IPR000225 GO:0005515
Vifa1g00127 919 Pfam Armadillo/beta-catenin-like repeat 464 498 IPR000225 GO:0005515
Vifa1g00127 919 Pfam Armadillo/beta-catenin-like repeat 501 543 IPR000225 GO:0005515
Vifa1g00127 919 Pfam Armadillo/beta-catenin-like repeat 678 714 IPR000225 GO:0005515
Vifa1g00127 919 SMART fbox_2 42 82 IPR001810 GO:0005515
Vifa1g00127 919 FunFam Protein ARABIDILLO 2 355 503 - -
Vifa1g00127 919 Gene3D - 678 774 IPR011989 -
Vifa1g00127 919 SUPERFAMILY RNI-like 57 293 - -
Vifa1g00127 919 ProSiteProfiles F-box domain profile. 36 82 IPR001810 GO:0005515
Vifa1g00127 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 601 643 IPR000225 GO:0005515
Vifa1g00127 919 Gene3D - 484 568 IPR011989 -
Vifa1g00127 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 642 687 IPR000225 GO:0005515
Vifa1g00127 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 511 556 IPR000225 GO:0005515
Vifa1g00127 919 Pfam F-box-like 39 85 IPR001810 GO:0005515
Vifa1g00127 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 512 IPR000225 GO:0005515
Vifa1g00127 919 PANTHER PROTEIN ARABIDILLO 1 1 916 - -
Vifa1g00127 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 686 728 IPR000225 GO:0005515
Vifa1g00127 919 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 471 IPR000225 GO:0005515
Vifa1g00127 919 SUPERFAMILY ARM repeat 377 746 IPR016024 -
Vifa1g00127 919 Gene3D Ribonuclease Inhibitor 33 311 IPR032675 -
Vifa1g00127 919 SMART arm_5 631 674 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 716 757 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 418 458 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 500 543 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 544 585 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 675 715 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 459 499 IPR000225 GO:0005515
Vifa1g00127 919 SMART arm_5 590 630 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00127 Vifa-Chr1 21182997 21196112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00127 572 759 U-box Gene Family AT2G23140 35.450 9.77e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00127 - - ccaj:109792060 1518.06