Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00122 ATGAACTTCATGTCTTTGCTACTCAAATATGTCATTTTCACTATCATAGCCTTAACCAAAGTTAGTTGCTTATATTTCAATTTCCCAACTTTCCAACCAAGTGATGAATCCAAATTGATCCTAAGCAAAAACTCAAAAATATACTTAGATGCCATCCAAATAACCCCAGATATCCGTGGTGAAATCAAGAATTATTCAGGACGTGCTTTTTACAATAAGCCATACACACTTTGGAACAAGAAAAACAACAAAATAGCTTCTTTCAACACCACTTTTGTTCTCAACATAACTCCTCAAACTTCCCCTGGTGGAGAAGGCATAGCCTTTATCTTAACAGCAGATACATCTCTCCCTGAAAACAGTCAAGGAGAATGGTTTGGTATTGTAAATGCTTCTACAAATGGTACTTCTCGAGCTGGAATTCTCGCGGTAGAGTTTGATACACGACAAAGTTCAACACAAGGCGGTTCTCACAACCATGTTGGAATCAACATAAATAGCATTTCATCGTTGACACAAGCATCGTTAGCGAACACTAAGGTCAATCTTTCATCCGGTATAAATGTAATTGTGAAAATTCAATATTCCAATGATATAGTATCTGTTTTTGGTTCAATGAGTGAAAACTCACAAGATTCTATGGAGACGCTTTTGGTTTCTCCACCTCTTAATCTATCTTACTATCTTAATCAAGAGGTTTACGTTGGGTTTTCTTCTTCAACGAGCAATTACACGCAGCTAAATTGTGTGAAAGCATGGGAATTCAATGGTTTTGATATTGCCGATAATAAAAAAATTCCTGTGTGGATTTGGATCATTGTTCCAGTTGTGATAATCATCAGCGGATTAGTCTTTTTCCTTGTTTATTTTCATAGAAATAAAAACATGGAGATTTCAGGAGATACATATCCAGAGATAGAGAATCAAATTCAACACTCATCTATGGCTCCAAAGAAGTATGAGTTAAAGGAATTGATAAACGCAACAGGTGCATTCAGCCATCAGAACAAGCTTGGCCAAGGTGGATTTGGAACTGTTTATAAGGGTGTTCTTGGAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCGAAGAACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTAACAACAATTGGAAGCCTTCACCACAAAAACTTGGTGAAACTCATTGGTTGGTGCTATGAGAAAAAAGAGCTTCTACTTGTTTATGAGTTCATGCCAAATGGAAGCTTAGACAAATACCTGTTCAACCAATCAAGTGACGAATTTGAATTACGTTATTCAAAAGTACTTGATTGGAGTACTAGAAATAGTGTGATTCGTGGCGTGGCGCAAGCATTGGATTATCTTCATAATAATTGTGAAAAAAGAGTACTTCATAGAGACATTAAAACAAGTAACATCATGTTGGACTTAGATTATAATGCAAAATTGGGTGATTTCGGATTGGCGCGTACAATTCAAAAGAGAGATGAAACTCATCATTCAACAAAGGAAATTGCGGGAACCCCGGGTTATATGGCACCGGAAACTTTTCTAACGGGGAGAGCAACGATGGAAACGGATGTGTATGCATTTGGTGTTCTTGTTTTGGAAGTTGTGTGTGGAAAAAGGCCAGGAAATATGTATGCACAAGATGACTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCATTATGGAAAGGGGAGAATTGTTAGTGTTGTTGATAAAAGGATTGTTAGTGTTGTTGATAAAAGGATAAGTGGTTGTGAAAAGGATGAGATTGAGATGATGAAATCGGATGAAGAAGTTGAAATTGTGCTTATTCTTGGGTTGGCTTGTTGTCATCCAAACCCAAATGAAAGACCATCAATACAAACAGTTTTGATGGTTCTAAATGGAGAAGCTTCTCCTCCAATTGTTCCAATGGAAAGACCTTCTTTTGTTTGGCCTGCCATGTCTTCATCATTCAAAGAAGGTGAAGATAGTTCTTTTATCAGTGGAACCCTCACTCCATTCACTCAATTAAGTGGCAGATAA 2028 0.3713 MNFMSLLLKYVIFTIIALTKVSCLYFNFPTFQPSDESKLILSKNSKIYLDAIQITPDIRGEIKNYSGRAFYNKPYTLWNKKNNKIASFNTTFVLNITPQTSPGGEGIAFILTADTSLPENSQGEWFGIVNASTNGTSRAGILAVEFDTRQSSTQGGSHNHVGININSISSLTQASLANTKVNLSSGINVIVKIQYSNDIVSVFGSMSENSQDSMETLLVSPPLNLSYYLNQEVYVGFSSSTSNYTQLNCVKAWEFNGFDIADNKKIPVWIWIIVPVVIIISGLVFFLVYFHRNKNMEISGDTYPEIENQIQHSSMAPKKYELKELINATGAFSHQNKLGQGGFGTVYKGVLGNNKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYEKKELLLVYEFMPNGSLDKYLFNQSSDEFELRYSKVLDWSTRNSVIRGVAQALDYLHNNCEKRVLHRDIKTSNIMLDLDYNAKLGDFGLARTIQKRDETHHSTKEIAGTPGYMAPETFLTGRATMETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSIVYWVWEHYGKGRIVSVVDKRIVSVVDKRISGCEKDEIEMMKSDEEVEIVLILGLACCHPNPNERPSIQTVLMVLNGEASPPIVPMERPSFVWPAMSSSFKEGEDSSFISGTLTPFTQLSGR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00122 675 Pfam Protein kinase domain 333 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00122 675 FunFam Probable L-type lectin-domain containing receptor kinase S.5 317 407 - -
Vifa1g00122 675 SMART serkin_6 332 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00122 675 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Vifa1g00122 675 Gene3D - 22 266 - -
Vifa1g00122 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Vifa1g00122 675 FunFam Probable L-type lectin-domain containing receptor kinase S.5 23 264 - -
Vifa1g00122 675 PANTHER - 53 638 - -
Vifa1g00122 675 Pfam Legume lectin domain 24 265 IPR001220 GO:0030246
Vifa1g00122 675 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 271 IPR013320 -
Vifa1g00122 675 Gene3D Transferase(Phosphotransferase) domain 1 408 634 - -
Vifa1g00122 675 SUPERFAMILY Protein kinase-like (PK-like) 313 628 IPR011009 -
Vifa1g00122 675 Gene3D Phosphorylase Kinase; domain 1 295 407 - -
Vifa1g00122 675 FunFam probable L-type lectin-domain containing receptor kinase S.5 408 634 - -
Vifa1g00122 675 CDD STKc_IRAK 338 630 - -
Vifa1g00122 675 ProSiteProfiles Protein kinase domain profile. 332 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00122 675 CDD lectin_legume_LecRK_Arcelin_ConA 24 256 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00122 Vifa-Chr1 20797670 20799697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00122 6 644 Receptor kinase-like Gene Family AT5G55830 35.578 1.18e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g00122 Pkinase 8.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00122 - - tpra:123883598 998.038