Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00121 ATGGCATATCAAAACTCAATTACCTTGAAAGTTTTAGTATTGCTAATAGTTTTACTAGGAGCCGAGGCTAGGGATTTCGAATTTTTTCCTAAGAAAACTCTTATAATTAGGAATGATATCTCTCCACATCCAACTCCTTTAGATCTCATTGTTCATTGCAAATCAAAAGATGATGATCTTGGATTTCACACACTTGCATTTGGAGGAACTTACTCATTTCAGTTTAGACCAAAATTTTTTCCAATATTTGGTCGTACTTTATTCTCTTGTAGTTTTACATGGAAAGGAAACCCCAATCCTCACTGTCTTAACGTTTACAAACAAGGTGTGGATGACTGCAAAGTTTGCAGTTGGAAAATAAATACAACTGGTGGTTGTAACGATTTTAAAGGACATGAGGAATGTCGAAAATGGGAAGGCTGCATATGA 429 0.352 MAYQNSITLKVLVLLIVLLGAEARDFEFFPKKTLIIRNDISPHPTPLDLIVHCKSKDDDLGFHTLAFGGTYSFQFRPKFFPIFGRTLFSCSFTWKGNPNPHCLNVYKQGVDDCKVCSWKINTTGGCNDFKGHEECRKWEGCI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00121 142 Pfam Plant self-incompatibility protein S1 34 138 IPR010264 -
Vifa1g00121 142 PANTHER - 29 128 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00121 Vifa-Chr1 20738565 20738993 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00121 30 126 Carbohydrate Esterase AT3G16970 43.689 4.05e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00121 - - psat:127105312 150.214