Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00095 ATGCGGATGAGTTGTAACGGTTGTCGAGTACTAAGAAAAGGCTGCAGTGAAAATTGTAGCATAAGACCTTGTTTGCAATGGATCAAAAACCCTGAATCACAAGCTAATGCCACCGTCTTTTTAGCTAAATTCTACGGTCGTGCCGGCCTCATGAACCTCGTCAACGCTGGCCCCGAACATCTCCGCCCAGCAATTTTTCGATCGTTGTTGTATGAAGCATGCGGTCGAATAGTGAACCCAATTTATGGTTCGGTTGGTTTATTATGGTCGGGGAGCTGGCAGCTATGTCAAGCTGCGGTGGAAGCCGTTTTAAAAGGCGCTCCGATTACGCCGATTACTTCAGAAGCAGCTACTCACGGAAGAGGTCCACCACTGAAGGCATATGACATACGCCACGTCTCAAAAGATGAGAACTCGGCTGCGTCGAATGAGTTGACTCAGCAGCGAGTCAAGACACGATCTCGTAAAAGATCGAGTTTGGCTAAGCCCAAGTTACAAGACGAGGTGAAAAGTGGGAATGATGAAAAGAGAATTGAATTCGGTTCGGTTGAACCAGTTGAGCCGGTTCAAGAGGTTTTTGTGAACCGGGCTGCGAGTCATGAGTCGTCGATAAGTCATCAGTCGGAGGCAGTGAATGCTGCGGCGGTGGTGGATTTGGAGAGTAAAGAGAGTGAAAGTATGGCTTCGGTTGAAACGGCGGATAATTCCATGAACTTGTTTCGAGATGAACCGGAGTCAAACCGGAGTTTGAAGCGGGCGGACCGGACCGGTGAGGAGAATGTTGGGTTAGAGCTGACACTTGGGTTGGAACCGGTTTCGCAGGTTTATCATGTGGTTCCGGTTAAAAAAAGAAGGGTGGAGTTGAAGGATTGTAGTGGCGGTTCGTGGAATGTGGAGCTGGGGCTTCAGTATCCGGTTTTAGACCGGGTTTAA 933 0.4887 MRMSCNGCRVLRKGCSENCSIRPCLQWIKNPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAATHGRGPPLKAYDIRHVSKDENSAASNELTQQRVKTRSRKRSSLAKPKLQDEVKSGNDEKRIEFGSVEPVEPVQEVFVNRAASHESSISHQSEAVNAAAVVDLESKESESMASVETADNSMNLFRDEPESNRSLKRADRTGEENVGLELTLGLEPVSQVYHVVPVKKRRVELKDCSGGSWNVELGLQYPVLDRV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00095 310 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vifa1g00095 310 PIRSF AS2 1 303 IPR017414 -
Vifa1g00095 310 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vifa1g00095 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 267 - -
Vifa1g00095 310 MobiDBLite consensus disorder prediction 136 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00095 Vifa-Chr1 17248986 17250124 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00095 1 286 AS2 family AT3G02550 57.343 3.49e-108 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g00095 LOB 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00095 - - lja:Lj1g3v3317390.1 433.335