Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00073 ATGAAGGAACTAGTGTTGGTGTTGTTCATGAAGACACAAATCATCATCACAATCACCTTGCCGACCCTTGTCTTGTTCTCACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCACCAACGCTTTGATTGATGTTGTTACTCAACTCGGTGGACCAAGCAAAGCCACACCGAAAGCAATCATGAGAACCATGAATGTCAAGGGTTTGACACTCTATCACTTAAAGAGTCATCTTCAGAAGTATAGGCTCGCTTCTGATGCAAATGAGGGTCACGAAGTCAAGGAGGCTTTAAGAGCACAGATGGAAGTGCAAAGCAAACTACATTTACTAGTGGAGGCAGAGAAGCACCTGCTAATTCTCCAAGATGCAGAGCGAAGATATATGGCCACGCTTGAGAGAGCTTGTAAGATGTTGGCTGATCAGTTTATTGGCGACACAACTGTAGACAACAGTACATCCGTTTCCAACTTTGGCAAGTTTCGGTAA 495 0.4424 MKELVLVLFMKTQIIITITLPTLVLFSLLIQNLVFVGLLTFTNALIDVVTQLGGPSKATPKAIMRTMNVKGLTLYHLKSHLQKYRLASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLLILQDAERRYMATLERACKMLADQFIGDTTVDNSTSVSNFGKFR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00073 164 Gene3D - 41 88 - -
Vifa1g00073 164 Pfam MYB-CC type transfactor, LHEQLE motif 95 140 IPR025756 -
Vifa1g00073 164 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 46 153 IPR044848 GO:0003700
Vifa1g00073 164 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 86 IPR006447 GO:0003677
Vifa1g00073 164 SUPERFAMILY Homeodomain-like 45 87 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00073 Vifa-Chr1 13112109 13112700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00073 45 144 G2-like Transcription Factor Family AT3G24120 44.604 1.44e-29 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g00073 Myb_CC_LHEQLE 2.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00073 - - gmx:100779871 175.637