Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00060 ATGTTCAGCAGTAAACCATCTCAACCTTCCACCCCCCTGTTACTGTCCGAAACCTCCTTCACCATCTCTCCACACTTGCTACCCTCCCATCTCGCTTCTTTCTCCTTAACAACAACACCAACGAACCTGCTGTCCGTCCTAATTTCTGTTACCAAAACTGATACTCCCTTCGTCGAACAACTTGCCATCGTATCAATTCTTCTTCCCATCATCACCTTGCCACAACAACCTCAGTTGTTAACCCCCAAATCCCTTTTCTCTCCTCACGCCCATATCACCTCCCATTTACACCATCCAAATGTAACAGAGCTTGTAGGTTATTGCTCAGAGCATGGACAACACCTCTTAGCTTACGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACGTGTCTGATGAATTCAGTAAACTATTGATATGGAATTCTCGTGTCAAGATAGCTTTGGGGACAACACGCGCTTTAGAGTACCTGCATGAAGTTTGTTCTCCATCAGTTGGGCATAAGAATATTAAGTCAGCCAATATATCACTTGATACAGAGCTTAATCCTCATCTTTCAGACTGTGGATTGGCAAGCTACATTCCAAATGCAGAGCAGATACTAAACCATAATGTTGGATCTGGATATGATGCCCCTGAAGTTGCATTATCCGGTCAGTATACCTTTAAAAGTGATATCTACAGCTTTGGGGTTGTCATGTTGGAGCTTCTCAGTGGCCGCAAACCATTTGATAGCTCAAGAGCAAGACCAGACCAGTCTTTGGTTCGATGGGCAACGCCCCAGCTTCATGACATTGATGTGTTGGCTAAAATGGTTGATCCAGCACTGAAAGGGCTATATCCTGTTAAATCTCTGTCACGTTTTGCTGATGTTATTGCTCTTTGCGCACAGCCGGAACCTGAATTCCGACCACCAATGTCAGAGGTGGTCCAAGCACTTGTACGATTAGTGCAGCGAGCCAACATGAGCAGGCGGACAACATTTGGAAGTGATCATGGAGGATCTCTACGAGGAAGTGATGATCCAGCTATACGAGACGTCCAAATCAAAAACATACTCCCACGAACATCATTCTCCCCTGCTAGCGCTCATCCCCTTGCTGTAACTTCTTCTTCACCCTTTTTAATGATTATTATTTTTTAA 1149 0.4439 MFSSKPSQPSTPLLLSETSFTISPHLLPSHLASFSLTTTPTNLLSVLISVTKTDTPFVEQLAIVSILLPIITLPQQPQLLTPKSLFSPHAHITSHLHHPNVTELVGYCSEHGQHLLAYEFHKNGSLHDFLHVSDEFSKLLIWNSRVKIALGTTRALEYLHEVCSPSVGHKNIKSANISLDTELNPHLSDCGLASYIPNAEQILNHNVGSGYDAPEVALSGQYTFKSDIYSFGVVMLELLSGRKPFDSSRARPDQSLVRWATPQLHDIDVLAKMVDPALKGLYPVKSLSRFADVIALCAQPEPEFRPPMSEVVQALVRLVQRANMSRRTTFGSDHGGSLRGSDDPAIRDVQIKNILPRTSFSPASAHPLAVTSSSPFLMIIIF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00060 382 PANTHER OS01G0253100 PROTEIN 86 325 - -
Vifa1g00060 382 Gene3D Phosphorylase Kinase; domain 1 68 125 - -
Vifa1g00060 382 ProSiteProfiles Protein kinase domain profile. 1 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g00060 382 Pfam Protein tyrosine and serine/threonine kinase 86 315 IPR001245 GO:0004672|GO:0006468
Vifa1g00060 382 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 121 329 - -
Vifa1g00060 382 SUPERFAMILY Protein kinase-like (PK-like) 90 315 IPR011009 -
Vifa1g00060 382 Gene3D Transferase(Phosphotransferase) domain 1 126 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00060 Vifa-Chr1 10504458 10506914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00060 94 328 Strubbelig Receptor Gene Family AT1G53730 81.356 7.95e-131 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa1g00060 PK_Tyr_Ser-Thr 1.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00060 - - psat:127132034 508.064