Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00058 ATGTATCCTCCACCATCTCATGTCTCTAAAACTAGAAGAGTATTGAAAGTTAAATATGATGATCCTGATGCAACGGATTCTTCATCTGATGAAAGAGATAATAGTATTGTGGATCCAACAAAGAGGAAGAGAGTTGTGCTTGAAATTGCATTGCCTAATGTTCCGTGTGACCAAATTGTTGATAATGAATTGAACACGAATAATAAGAGTGTTGGAACACGAATACATGCAGTGAAACAACCATCTTGCAAATACAAAGGTGTTCGGATGAGACAAGGGGGTCGATGGGCAGCAGAAATCCGTAACCCGATTGATGGTACCCGTAATTGGTTGGGAACTTTCGACAACGCGGAAGATGCTTCTAAAACTTATCAAGCTAAGAGACTTGAATTTGAAACTATGTATAAGAAGGATTTGAGTAAAAGGAAGATGAATAACAGATTCAAAAAAGTTTCTTTTGCTGAACCTTTGGTTGCTTCTTTGAATGACTCCAAGAGAGACACCTCAATATATTTGTATCTTCGCCTCGATTGGTTAGCGCTGAATTGGTTGAAAGTGTTGAGGTTTCAAATGATGAAACCAATTCCTTAA 591 0.379 MYPPPSHVSKTRRVLKVKYDDPDATDSSSDERDNSIVDPTKRKRVVLEIALPNVPCDQIVDNELNTNNKSVGTRIHAVKQPSCKYKGVRMRQGGRWAAEIRNPIDGTRNWLGTFDNAEDASKTYQAKRLEFETMYKKDLSKRKMNNRFKKVSFAEPLVASLNDSKRDTSIYLYLRLDWLALNWLKVLRFQMMKPIP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00058 196 MobiDBLite consensus disorder prediction 1 37 - -
Vifa1g00058 196 ProSiteProfiles AP2/ERF domain profile. 84 147 IPR001471 GO:0003700|GO:0006355
Vifa1g00058 196 Gene3D AP2/ERF domain 83 147 IPR036955 GO:0003700|GO:0006355
Vifa1g00058 196 SMART rav1_2 84 138 IPR001471 GO:0003700|GO:0006355
Vifa1g00058 196 CDD AP2 83 131 IPR001471 GO:0003700|GO:0006355
Vifa1g00058 196 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Vifa1g00058 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 131 - -
Vifa1g00058 196 MobiDBLite consensus disorder prediction 13 37 - -
Vifa1g00058 196 PRINTS Ethylene responsive element binding protein signature 85 96 IPR001471 GO:0003700|GO:0006355
Vifa1g00058 196 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Vifa1g00058 196 SUPERFAMILY DNA-binding domain 84 131 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00058 Vifa-Chr1 10101667 10102257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00058 5 143 AP2-EREBP Transcription Factor Family AT1G68550 39.161 7.44e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa1g00058 AP2 2.1e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00058 - - psat:127122621 249.98