Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00040 ATGGCATCAACAACATGTTTTGTCAACAAGAATGCATTTCCTATGAAAGTGGTTACTCCTATCTTTCATTCATATCCTGAACCTCTTGCAAAATATGATGATGTTGTGGCAAATCCAAAGCTATTCATGGTTACTTTGGAGAAGCTTCATGCTTCTATGGGCACCAAGTTCATGATTCCCATTATCGGAGGAAAAGAGCTAGATTTGTGTCGACTCTTCATTGAAGTTACTTCTCGTGGAGGGATTGAGAAGCTTATGAAAGAGAGAAGATGGAAAGAAGTAACAGCAGCTTTCAACTTTCCATCAACAGCCACAAATGCTTCCTTTGTTCTGAGAAAATACTATTCTTCATTACTTTATCACTATGAACAAATCTACTATTTTAGAGCCAATCGTTGGACACCTGCACCTTCAGATTCTTTGGATAATCAATCAACCATGACAATTCCTCCTTCAATCACACAGTTTTTGCAACCTTCTCCAGTAACACAATCAGTTATCTTTCAAAAATCAGGACTTAGTAATGCTTCTGAATTGCCTCAAGGTTCTTCACTCGCTGGAGTTATTGATGGAAAATTTGAAAGTGGATACCTAGTTTCGGTTTCGTTAGGCTCAGACATACTCAAAGGTGTACTATATGAGTCACCAAAGAGCATTATGATTAATAATAACAGTCTTGCCGGTACTGCATTGGGTGTTCAACGTCGCCGAAGGAGGAGGAAGAAGTCGGAGATAAAAAGGAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGTTACAATTTCTTCTTCGCGGAGCAACATGCTAGATTGAAGCTACTAAACCAAACCATGGACAAGGATATTAGTAGAATGATTGGTGAACTATGGAACAATTTGAAGGACTCGGAAAAAACAGTTTATCAAGAGATGGCTATTAAGGATAAAGAGAGATACAAAGCAGAAATGGACGATTATCGCGATAAACTAAAGACGAACATTGTAATCGATGATGCAATGCCACTGCAACAACAATTTCCGGAAGCAAATTCATCTTTGGTAGATGTTGACATAAAAATGCATGATTCATTTCAGACTCCAGAAGAGAGTAGTTCTGGTGGAAGTGATTATGTTGGAGATGATATCAACATGGATGGTTCTTCGGGTGGAGCAAGAGTTGATTCTGAAGCTTTTTTGGATTCGGAAAAGGTTTCAAAAGATGGAGTTATTGAAGTTGTTAGTCATTGTGAGGGAGAAGTGGATGCTGGAAGAGTTGAAGATCAACATAATCAAAAAATGAATGAGAATCAAAACATGTTAGCCTTGCTTTAG 1311 0.3837 MASTTCFVNKNAFPMKVVTPIFHSYPEPLAKYDDVVANPKLFMVTLEKLHASMGTKFMIPIIGGKELDLCRLFIEVTSRGGIEKLMKERRWKEVTAAFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRANRWTPAPSDSLDNQSTMTIPPSITQFLQPSPVTQSVIFQKSGLSNASELPQGSSLAGVIDGKFESGYLVSVSLGSDILKGVLYESPKSIMINNNSLAGTALGVQRRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQTMDKDISRMIGELWNNLKDSEKTVYQEMAIKDKERYKAEMDDYRDKLKTNIVIDDAMPLQQQFPEANSSLVDVDIKMHDSFQTPEESSSGGSDYVGDDINMDGSSGGARVDSEAFLDSEKVSKDGVIEVVSHCEGEVDAGRVEDQHNQKMNENQNMLALL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00040 436 CDD HMG-box_AtHMGB9-like 253 319 - -
Vifa1g00040 436 SUPERFAMILY HMG-box 241 324 IPR036910 -
Vifa1g00040 436 Coils Coil 302 322 - -
Vifa1g00040 436 SUPERFAMILY ARID-like 35 133 IPR036431 GO:0003677
Vifa1g00040 436 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 22 354 - -
Vifa1g00040 436 SMART bright_3 37 128 IPR001606 GO:0003677
Vifa1g00040 436 MobiDBLite consensus disorder prediction 230 259 - -
Vifa1g00040 436 MobiDBLite consensus disorder prediction 357 386 - -
Vifa1g00040 436 MobiDBLite consensus disorder prediction 233 247 - -
Vifa1g00040 436 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Vifa1g00040 436 Gene3D - 28 137 IPR036431 GO:0003677
Vifa1g00040 436 FunFam High mobility group B protein 15 30 144 - -
Vifa1g00040 436 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Vifa1g00040 436 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 253 320 IPR009071 -
Vifa1g00040 436 Gene3D High mobility group box domain 237 332 IPR036910 -
Vifa1g00040 436 SMART ARID_2 33 123 - -
Vifa1g00040 436 MobiDBLite consensus disorder prediction 416 436 - -
Vifa1g00040 436 Pfam HMG (high mobility group) box 253 320 IPR009071 -
Vifa1g00040 436 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
Vifa1g00040 436 SMART hmgende2 252 321 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00040 Vifa-Chr1 6328807 6331126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00040 1 353 ARID Transcription Factor Family AT1G04880 53.600 4.00e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g00040 ARID 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00040 - - gmx:100783284 464.536