Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00022 ATGCCACCGGGTTTTCGTTTTCACCCAACCGACCAAGAGCTTGTTCTTTCGTATTTGAAGCGTAAGGTGTTCTCTCTCCCTTTGCCTGCTGCCATCATCCCTGAAGCTGATCTTTGCAAGTCTGACCCATGGGATTTACCAGGCGATTTGGAACAAGAGAGGTACTTTTTCAGTACTAAAGAAGCGAAATACCCTAATGGGAACCGATCTAACAGAGCTACAAATTCGGGTTACTGGAAAGCTACTGGTTTGGACAAACAAATCATTAGCTGGTCGAAATCTGAGGTTGTTGGAATGAAGAAGACTCTTGTTTTTTACAGTGGAAAACCGCCTCATGGTTCGAGAACTGATTGGATTATGCATGAGTATCGTCTCGCTCCGTCTCACTCTAACCCTCTGAATGAAAACTGGGTTTTGTGCCGCATATTCCTCAAGAAAAGAGCCGGTACTAAAACTGCGAGTGTGAAACCAAACATGGACATCAACAACCTTAACAACTCAGCTCCAAACTCGTCTTCAAACTCAACTTGTGCTTCAAAGGTCCTTGTCTTCTATGATTTCTTGGCACAGAGTACTGTTGCATCTTCAATTTCACCGGCTACAAGTGGAATCACAGATGAACGGACTGAGCATGAAAATGAAGAAACCAGTAGCTCTTAG 660 0.4394 MPPGFRFHPTDQELVLSYLKRKVFSLPLPAAIIPEADLCKSDPWDLPGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIISWSKSEVVGMKKTLVFYSGKPPHGSRTDWIMHEYRLAPSHSNPLNENWVLCRIFLKKRAGTKTASVKPNMDINNLNNSAPNSSSNSTCASKVLVFYDFLAQSTVASSISPATSGITDERTEHENEETSSS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00022 219 Gene3D NAC domain 10 149 IPR036093 GO:0003677|GO:0006355
Vifa1g00022 219 Pfam No apical meristem (NAM) protein 2 125 IPR003441 GO:0003677|GO:0006355
Vifa1g00022 219 SUPERFAMILY NAC domain 1 145 IPR036093 GO:0003677|GO:0006355
Vifa1g00022 219 ProSiteProfiles NAC domain profile. 1 145 IPR003441 GO:0003677|GO:0006355
Vifa1g00022 219 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 182 - -
Vifa1g00022 219 MobiDBLite consensus disorder prediction 205 219 - -
Vifa1g00022 219 MobiDBLite consensus disorder prediction 196 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00022 Vifa-Chr1 2772860 2773673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00022 1 218 NAC Transcription Factor Family AT5G13180 55.932 3.05e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g00022 NAM 1.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00022 - - gmx:100170709 296.204