Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00008 ATGGGAGACGCAATTGATTTGTCTGGGGATGGAGGAGTCATCAAAACCATTGTGAGGAAGAGCAAGTCAGATGCTGTGGCTCCAACTGTAGATTTTCCCGTTGTTGATGTTCACTATGAAGGCACGCTCGCTGATACCGGTGAAGTCTTTGACACTACACATGAAGACAACATTATATTCTCCTTTGAACTTGGAAAGGGTAGTGTTATCAAGGCTTGGGATATTGCCGTCAAAACCATGAAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCAGATTATGCATATGGTAGCGCAGGATCTCCGCCAGATATACCTCCAGATGCAACACTGGTTTTTGAAGTTGAGCTAGTTGCCTGTAGGCCACAGAAGGGCTCTACTACTGGAAGTGTTTCAGAGGAGAGGGCTAGGCTAGAGGAGCTGAAAAAGGTGGAGAGATTTCTGCCGCTAAGCCGCGCCGCGAGAGAGGAAGAGACCTTTTTTCTAACCCTAAAATTCCCTTTTCAATTTTCATATCTTTTCTTTTTTTAG 531 0.4463 MGDAIDLSGDGGVIKTIVRKSKSDAVAPTVDFPVVDVHYEGTLADTGEVFDTTHEDNIIFSFELGKGSVIKAWDIAVKTMKVGEIAKITCKPDYAYGSAGSPPDIPPDATLVFEVELVACRPQKGSTTGSVSEERARLEELKKVERFLPLSRAAREEETFFLTLKFPFQFSYLFFF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00008 176 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 32 121 IPR001179 GO:0003755
Vifa1g00008 176 FunFam Peptidylprolyl isomerase 1 120 - -
Vifa1g00008 176 SUPERFAMILY FKBP-like 10 124 - -
Vifa1g00008 176 Gene3D - 3 120 IPR046357 GO:0003755
Vifa1g00008 176 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 34 118 IPR001179 GO:0003755
Vifa1g00008 176 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00008 Vifa-Chr1 1552784 1553314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00008 5 133 Calmodulin-binding Proteins AT5G48570 32.836 1.80e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00008 K01802 - gmx:100500018 270.781