Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00006 ATGGCCCATTCTTTCGGTCAAGCCGAGATTAATTGGGACAAGCTAGATAAAACCAAGTTCTACGTGGTAGGAGCAGGACTCTTTACCGGTGTTACGGTAGCACTTTATCCGGTTTCAGTTGTGAAAACTAGGCTGCAGGTTGCAACTAAGGGGGCTGTAGAGAAAAATGCCTTTTCTGTTGCAAAAGGATTACTTAAAACAGATGGCATCCCTGGTCTGTATAAAGGGTTTGGTACGGTTATCACTGGTGCCATACCGGCCAGAATCATATTCATGTCGGTTCTAGAGACCACAAAGGTGTATGCTTTTAAAATGGTGAAACCATTTGGACTATCTGAAACTACTCAGGCTGCCGTAGCAAATGGATTTGCAGGCATGACATCATCAGTTTTTGCTCAATCTGTGTTTGTACCAATTGATGTGGTTAGCCAGAAGTTGATGGTGCAAGGATACTCAGGCCATGCCAAATATAGTGGGGGTCTGGATGTTGCTCGTAAGATTATAAGGTCTGATGGCATTAAGGGATTGTATCGAGGGTTTGGTCTTTCTGTTGTTACTTATGCACCTTCTAGCGCAGTTTGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCTTGGACCAAGGAGCCAAACCTGATGAAGGCACTCCCAGTGTGCTGAAGATTGTTTTAGTTCAGGCTGCGGGTGGGATTATTGCCGGTGCAACTGCTTCCTGCATTACAACCCCATTTGATACTATCAAGACACGGTTACAGGTGATGGGACTTGAAAATAAAAGCTCTATAAAACAAGTTACTAAAGATTTAATCAAGCAAGATGGTTGGAAAGGCCTATATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCAGCATGGGGCACGTCAATGATATTGACTTACGAATATCTGAAACGAATATGTGCAATAGAAGAATAG 945 0.4317 MAHSFGQAEINWDKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVATKGAVEKNAFSVAKGLLKTDGIPGLYKGFGTVITGAIPARIIFMSVLETTKVYAFKMVKPFGLSETTQAAVANGFAGMTSSVFAQSVFVPIDVVSQKLMVQGYSGHAKYSGGLDVARKIIRSDGIKGLYRGFGLSVVTYAPSSAVWWASYGSSQRFIWRFLDQGAKPDEGTPSVLKIVLVQAAGGIIAGATASCITTPFDTIKTRLQVMGLENKSSIKQVTKDLIKQDGWKGLYRGFGPRFFSMSAWGTSMILTYEYLKRICAIEE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00006 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Vifa1g00006 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Vifa1g00006 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Vifa1g00006 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 311 - -
Vifa1g00006 314 Pfam Mitochondrial carrier protein 228 309 IPR018108 -
Vifa1g00006 314 Pfam Mitochondrial carrier protein 25 104 IPR018108 -
Vifa1g00006 314 Pfam Mitochondrial carrier protein 118 205 IPR018108 -
Vifa1g00006 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Vifa1g00006 314 FunFam Mitochondrial substrate carrier family protein 21 313 - -
Vifa1g00006 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Vifa1g00006 314 Gene3D Mitochondrial carrier domain 20 313 IPR023395 -
Vifa1g00006 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Vifa1g00006 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00006 Vifa-Chr1 1171301 1178080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00006 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 75.570 1.87e-169 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00006 K15121 - gmx:100781796 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00006 1 1171301 1178080 Vifa1g00006 1 1171301 1178080 ECH
Vifa1g05509 1 854633991 854636343 Vifa1g00006 1 1171301 1178080 PCT