Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00003 ATGGGTTTCTCTTTGTTCTCAAAACCAACAACACCTTGTATAGTTTTGTTCTTGTTCCTACTCTCTTGCACTTGTTTCACTTCAACAGATGCTTATGATCCACTTGACCCAAATGGGAATATCACCATCAAATGGGATATTATAAATTGGACACCAGATGGTTATGTTGCCGTTGTTACGATGAACAACTTCCAACAATATCGTCACATCGCCGCGCCTGGCTGGTCACTAGGATGGACATGGGCCAGAAAGGAGGTAATCTGGGCCATGGTGGGATCGCAGACCACCGAACAAGGTGATTGTTCAAAATTCAAAGGAAACGTACCACATTGCTGTAAAAAGGATCCAACCGTCGTTGATCTACTTCCCGGAACACCTTACAATCAGCAAATCGCGAATTGCTGCAGAGGTGGGGTGCTTAGTTCATATGCTCAGGATCCTACCAACGCAGTTGCGTCGTTTCAAGTGAGTGTCGGTAGAGCTGGAACAACGAATAAAACCGTTAAAGTCCCAAAAAACTTCACTCTGAAAGCACCCGGACCGGGTTATACTTGTGGCCCGGCAAAAGTCGTTAGACCTACTCAGTTTATTCAACCCGACAAAAGAAGAACGACCCAAGCACTCATGACATGGAATGTTACATGCACATATTCGCAATTTCTAGCTCAGAAAACTCCCACTTGCTGTGTATCGCTCTCGTCTTTCTATAACGAAACCATCGTACCGTGCCCAACATGTGCATGTGGCTGCCAGACTAATGCGTCTCAGTCGGGGAGCTGTGTAAATCCAAATACGCCGCATTTGGCATCGGTTGTTTCTGGTAACGGAAAGAATAATTTATCGCCTTTGGTTCAATGTACTAGTCATATGTGTCCGATCCGAATCCACTGGCATGTTAAAGTTAACTACAAGGAGTACTGGCGAGTGAAAGTTACTATTACGAATTTTAATTACCGTATGAATTATTCCGATTGGAACTTGGTTGTTCAACATCCGAACTTCGAAAATATTACTCAGCTGTTCAGTTTCAACTACAAGTCATTAAATCCTTATGGTTCAATAAATGATACAGCAATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTTAATCAAGCCGGCCCTAGTGGCAATGTTCAATCGGAGTTACTCTTCCGAAAGGATAAATCGACTTTCACTTTCGACAAGGGTTGGGCTTTCCCTCACAGAATCTACTTCAACGGCGACAACTGTGTGATGCCATCACCCGATGCTTATCCATGGTTACCGAATGCTGGTTCTCGACAAGAGGTTTCGATGTTTGCTTTATTGATGACCTCCTTAGTAGTCCTTGTATTTTACACATACATTTAA 1353 0.4316 MGFSLFSKPTTPCIVLFLFLLSCTCFTSTDAYDPLDPNGNITIKWDIINWTPDGYVAVVTMNNFQQYRHIAAPGWSLGWTWARKEVIWAMVGSQTTEQGDCSKFKGNVPHCCKKDPTVVDLLPGTPYNQQIANCCRGGVLSSYAQDPTNAVASFQVSVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKVVRPTQFIQPDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNETIVPCPTCACGCQTNASQSGSCVNPNTPHLASVVSGNGKNNLSPLVQCTSHMCPIRIHWHVKVNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFENITQLFSFNYKSLNPYGSINDTAMLWGVKFYNDFLNQAGPSGNVQSELLFRKDKSTFTFDKGWAFPHRIYFNGDNCVMPSPDAYPWLPNAGSRQEVSMFALLMTSLVVLVFYTYI 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00003 450 Pfam COBRA-like protein 55 218 IPR006918 GO:0010215|GO:0016020
Vifa1g00003 450 PANTHER PROTEIN COBRA 20 440 IPR006918 GO:0010215|GO:0016020
Vifa1g00003 450 PIRSF COBRA 4 450 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00003 Vifa-Chr1 171281 174242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00003 15 445 COBRA Gene Family AT3G02210 74.827 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00003 - - gmx:100783820 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00003 1 171281 174242 Vifa1g00003 1 171281 174242 ECH
Vifa1g05503 1 853167508 853169872 Vifa1g00003 1 171281 174242 PCT
Vifa1g00003 1 171281 174242 Vifa1g05504 1 853170360 853173314 PCT