Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g00002 ATGAGGCTTCTTATATCAGCTCTATGTGTCACTGTGCTATGTTCTTATGCAGCGGCGTATGATCCTTTGGATCCTGACGGAAACATTACGATCAAATGGGATGTTGTGTCGTGGACACCAGATGGCTATGTGGCAGTGGTAACGATGAGCAATTTCCAAATGTATCGACACATAATGAATCCGGGCTGGACATTAGGATGGTCATGGGCTAAGAAAGAAGTTATATGGTCAATGGTAGGATCTCAAACAACCGAGCAAGGAGATTGTTCTAAATTCAAAGGCAATGTACCTCACTGCTGCAAGAAAACTCCAACAGTTGTAGACCTTCTCCCTGGTGTCCCTTACAATCTACAATTCTCAAACTGTTGCAAGGGTGGAGTTGTAGCAGCATGGGGACAAGACCCTTCATCAGCTGTTTCATCTTTTCAAATCAGTGTTGGACAAGGTGGTACTTCAAACAAGACAGTTAAACTTCCTAAGAACTTCACTCTCTCGGCTCCCGGACCTGGCTATACTTGCGGTCCTGCTAAGGTTGTTCCTTCCACCACTTTTCTCACCTCGGATAAGCGCCGCAAAACTCAAGCACTTATGACATGGAATGTAACATGTACTTACTCACAATTTCTTGCAAGAAAGAACCCAAGTTGCTGTGTTTCTTTGTCATCTTTCTATAATGAGACTATTACTCCTTGTCCTTCTTGTGCTTGTGGATGCCAGAACAAGAAGAATTGTGTCAAGGGTCATTCCAAATTCCTGGACATGGTAGGGTTACATACACCAAAGAGAGACAATGAACCATTGCTACAATGCACTCATCATATGTGCCCTATCAGGGTACACTGGCATGTGAAGGTTAACTATAAGGACTATTGGAGAGTCAAGATAGCTGTTACAAACTTCAATTATAGATTGAATTATTCTCTTTGGACTCTTGCTGTTCAGCATCCAAATCTTAACAATGTCACCCAAGTTTTCAGCTTTGATTACAAGCCTTTGCTTCCCTATCAATCCATAAATGACACAGGTATGTTCTATGGCATGAAATTCTTCAATGATCTCTTGATGGAAGCTGGACCAAGTGGAAATGTTCAATCAGAAGTGCTTCTTCAAAAGAACAAAGAAACATTCACTTTCAACCAAGGATGGGCATTTCCTAGAAGAGTTTACTTCAATGGTGAAGAATGCATGATGCCACCACCAGATACCTACCCTTACCTCCCTAATTCTTCCCCTTTGAATTCCCTCAACTTCCAAGCATTCATTACCTCATTCCTTCTCTTGCTAGCTCTTTGGTGA 1296 0.4205 MRLLISALCVTVLCSYAAAYDPLDPDGNITIKWDVVSWTPDGYVAVVTMSNFQMYRHIMNPGWTLGWSWAKKEVIWSMVGSQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNLQFSNCCKGGVVAAWGQDPSSAVSSFQISVGQGGTSNKTVKLPKNFTLSAPGPGYTCGPAKVVPSTTFLTSDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKNCVKGHSKFLDMVGLHTPKRDNEPLLQCTHHMCPIRVHWHVKVNYKDYWRVKIAVTNFNYRLNYSLWTLAVQHPNLNNVTQVFSFDYKPLLPYQSINDTGMFYGMKFFNDLLMEAGPSGNVQSEVLLQKNKETFTFNQGWAFPRRVYFNGEECMMPPPDTYPYLPNSSPLNSLNFQAFITSFLLLLALW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g00002 431 PANTHER PROTEIN COBRA 8 423 IPR006918 GO:0010215|GO:0016020
Vifa1g00002 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0016020
Vifa1g00002 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g00002 Vifa-Chr1 167947 170665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g00002 19 430 COBRA Gene Family AT3G29810 68.039 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g00002 - - gmx:100783410 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00002 1 167947 170665 Vifa1g05503 1 853167508 853169872 PCT