Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01574 ATGGGAGGCGAAGGAAGGGCGGCGATGAAGAAGAAGAAGAAGAACACAAAATCTGGGGGCTTCGAGTCACTGGGTCTGAGTCCGAATGCGTTCAAGGGAATCAAGCGCAAAGGGTACAAAGTTCCCACTCCCATTCAGCGCAAGACCATGCCCCTCATCCTCTCTGGCTCGGACGTCGTTGCCATGGCTCGCACCGGCTCCGGCAAAACGGCTGCGTTTCTCGTCCCCATGATTCAGCGCCTCAACCAGCACATCCCTCAGTCTGGAGTCAGAGCCCTGATTCTGTCTCCCACTAGGGACCTCGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGCCCACTTCACAGACCTTCGTATCAGTTTGTTGGTTGGCGGCGATAGCATGGAGAGTCAGTTTGAGGAATTGGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGCAGGCTCATGCATCATTTGTCGGAAGTTGATGACATGTCCTTGCGCAGCGTCGAGTACGTTGTTTTCGATGAGGCCGATTGTTTGTTTGGCATGGGTTTTGCCGAGCAGTTGCATAAGATTCTTGCTCAGCTCGGGGAGAATCGCCAGACCTTGCTTTTCAGTGCCACATTACCCAGTGCTCTTGCTGAATTTGCAAAGGCTGGTCTGAGAGACCCTCAGCTTGTTCGCCTCGACCTGGAGACTAAGATCAGCCCTGACTTGAAGCTCGCCTTCTTCACCTTGAGGCAGGAGGAGAAGTACCCTGCCCTGCTTTACTTGATCAGGGAACATATTGGTTCTGATGAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTAGAGTTTCTCAATGTCTTGTTTCGCCAAGAGGGTATTGAGCCGTCTGTGTGTTATGGCGACATGGATCAGGATGCTCGAAAAATCCATGTATCCAGGTTTAGGTCTAGGAAGACCATGTTGTTGATTGTCACCGACGTTGCGGCTCGTGGCATCGACATTCCATTGCTTGATAATGTTATCAATTGGGACTTCCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGGACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCCTACCTCTTGGATCTTCATTTGTTTCTTTCAAAACCCATCAAACCTGCTCCCACTGAAGAAGAGCTCTTGCAGGATATGGATGGTGTAATGTCTAGATGTGATCAGGCAATGGCAAATAGAGAAACCATTTATGGTCGTTTCCCACAAAAAGTCATTGACCTTTTTTCAGACAGAGTCAGGGAAGTTATGGATACTTCTGCAGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTATATTCAAAAACAAAACCCTTACCTGCCAAGGAGTCCATCAGAAGAGTAAAGGATTTGCCTCGTGAAGGGCTGCATCCAATGTTCATGAAGGTGTTGGAAACGGGAGAGTTAACAGCACTTGCATTTTCTGAGCATTTGAAGAAGTTTAGGCCAAAACAAACCATTTTGGAAGCCGAAGGAGAAGCAGCTAAATCAAAGCATCAACAGAGTAAAATTGTTGTTGCTCCCCCTCTTCCAAGGATTAAAATCAACGCTTCTCTTGGCCCTTCCGGGCAATGGGGCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTCCACGAACAACAGCAATCTAAGGATAATATGGAAAAGGAGGAAATCGAATCAGAACTCAATCCTTCCATGGAGAAAGGAAGAAAAGCACGTGGTTCTAAGAGAAAGACCCAAAGTTTCAAGGATGAAGATCACTATATAAGTTCAATACCAAAAAATCAAGCTGGCCTTTCAGTAAAAGCCAATGAAGACTTTGCTTCAAATAGATTGGACTCCGCTGTCCTTGATCTAGTGGCAGATGATGGTGCTGGTATTCACAAACAAAGATCTATGTATCACTGGGATAAGAGGAGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAACGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAGGCCACCAAGACTGGTTTGTATAAGAAGTGGAAAGAACGTTCACATGGTAAGATATCACTTAGAGGGACAAACGACGGTGATCCTCAGGAATCAACAAGTTTGGCAGGATCTTACCAAAGAGGTCGTAGGAATTTTAGAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAAAGGCAGCAAAAGGCCAACAGGACTTCTTATATCAAAAGCAAGTCGACGAAGGGTAAAAAGTTTGGTAAAAATGGTAAAAGTGAAGACATCGTGGGCATCGGCAGGAGAAGAGAGAAGAGGTATCTTTCAACTTCCAACTATCTCAGTGCTTTTTCAAACTCTGCTGTCACTCCTCCCTCAGAAGAAGATCCATTTGATATAAAACCTGTGATAGATTTGTTTCTTGTGTTGTGGCTGCTCATGGCTTCTGTGGATCTGTGCAAAGATTCCATGCAAGATGCTATTACTCCAATTCCGAAGGCTGCCACCGATTGTGCGGTGCCTATAACTCCCGAGGCTCTCACCGAGAATGGAGATTTTCAATCCCAATCCCCTCTCACTCTCTCAGTGCTCAGGAAACAACTCAAACGAGCCTGCATTCATTGCGATTCTGACAGAGGTGGCTTTGTTGATAATGGTGATGAAAATGACAATGGCAATGGTAGTATTGAGAGCCCCCGAACTCCTGAGGATGGTGTTTTTGATCCCTTTGCACCTGGTCCTGATAACATGGCGCGGGCACCCAGCAGCAACAAGTATCTTGACGACTACAGGAACAGCGTCGCCCGCAGACTTAATTTTCAGCCCTCCTTTGATGTTTCTCAGGCTGATAGTGACACTCTTTCAGATGAGGACATGGTTGAGTCCGTGTACGAGAATCTTTTGCAAGTGATTTTTTCAAAGCAGGCTGAGGAGGTTCTTGCTCAACTGTCATACTATTGTGAAACACCTCCTTCTCCGTCTCGCATCACTGGAATTGCCGATGCTTGTCCAGGTGCACCTAAGAAGCCAGCGGCTCCACCCAGGAACATCGATCCGAGGTTATGCAAGAAGCTTGAATTCTGA 3168 0.4615 MGGEGRAAMKKKKKNTKSGGFESLGLSPNAFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIQRLNQHIPQSGVRALILSPTRDLALQTLKFTKELAHFTDLRISLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHKILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKISPDLKLAFFTLRQEEKYPALLYLIREHIGSDEQTLIFVSTKHHVEFLNVLFRQEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEELLQDMDGVMSRCDQAMANRETIYGRFPQKVIDLFSDRVREVMDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPREGLHPMFMKVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKSKHQQSKIVVAPPLPRIKINASLGPSGQWGDVMKRKRAIHENIINLVHEQQQSKDNMEKEEIESELNPSMEKGRKARGSKRKTQSFKDEDHYISSIPKNQAGLSVKANEDFASNRLDSAVLDLVADDGAGIHKQRSMYHWDKRSKKYIKLNNGDRVAANGKIKTESGAKTKATKTGLYKKWKERSHGKISLRGTNDGDPQESTSLAGSYQRGRRNFRGSKKQHSMPNAHVRSEIKDMDQIRKERQQKANRTSYIKSKSTKGKKFGKNGKSEDIVGIGRRREKRYLSTSNYLSAFSNSAVTPPSEEDPFDIKPVIDLFLVLWLLMASVDLCKDSMQDAITPIPKAATDCAVPITPEALTENGDFQSQSPLTLSVLRKQLKRACIHCDSDRGGFVDNGDENDNGNGSIESPRTPEDGVFDPFAPGPDNMARAPSSNKYLDDYRNSVARRLNFQPSFDVSQADSDTLSDEDMVESVYENLLQVIFSKQAEEVLAQLSYYCETPPSPSRITGIADACPGAPKKPAAPPRNIDPRLCKKLEF 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01574 1055 CDD SF2_C_DEAD 245 366 - -
Vian9g01574 1055 SMART DBP10CT_2 640 702 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vian9g01574 1055 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 247 396 IPR001650 -
Vian9g01574 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 375 IPR027417 -
Vian9g01574 1055 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 10 705 - -
Vian9g01574 1055 Gene3D - 3 226 IPR027417 -
Vian9g01574 1055 Pfam DBP10CT (NUC160) domain 640 701 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Vian9g01574 1055 Gene3D - 238 461 IPR027417 -
Vian9g01574 1055 MobiDBLite consensus disorder prediction 744 768 - -
Vian9g01574 1055 Coils Coil 558 578 - -
Vian9g01574 1055 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 19 47 IPR014014 GO:0003724
Vian9g01574 1055 MobiDBLite consensus disorder prediction 909 933 - -
Vian9g01574 1055 MobiDBLite consensus disorder prediction 713 728 - -
Vian9g01574 1055 MobiDBLite consensus disorder prediction 703 788 - -
Vian9g01574 1055 SMART ultradead3 38 245 IPR014001 -
Vian9g01574 1055 MobiDBLite consensus disorder prediction 569 605 - -
Vian9g01574 1055 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 223 IPR014001 -
Vian9g01574 1055 MobiDBLite consensus disorder prediction 570 592 - -
Vian9g01574 1055 MobiDBLite consensus disorder prediction 1 23 - -
Vian9g01574 1055 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Vian9g01574 1055 Pfam Helicase conserved C-terminal domain 247 357 IPR001650 -
Vian9g01574 1055 CDD DEADc_DDX54 19 224 IPR033517 -
Vian9g01574 1055 SMART helicmild6 276 357 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01574 Vian-Chr9 32030887 32038118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01574 21 390 Eukaryotic Initiation Factors Gene Family AT1G72730 31.989 1.68e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01574 K14808 - gmx:100806274 1354.73