Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01556 ATGGCTTCTCTGCTCCCTCCAACTCCAACTGCTACTTCCACGCTCAAACACAGCCAAATGGCCTCTTCCATGAAGCTCACAACTCCAAACAATGCTTCTTTCTTGCAAAACTCAAACCACCGTTTGAAGAGCAACTCTGCAAAGTGCCATGCAGTGTTTGGTGATGTGGCCAAAGGGTTGGTGGAGAACAGTGTTGGCATGGACCAGTTTCAAAGTATCCAATCGGGAATAGTGCAGTTTGAAAGAGTGACTGAAGGGTTATCTGACATGCAGAGGTGGGCGGTTCTCGTGTTTGGTGGGTTGACGTGGATTTACCTGACTGCGAGGCCAGGTGTGCTTGTTGGTGCCATTGATGCATACCTTTTGGCCCCTCTTCAACTGGGGTTGGACAATTTGGTTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTGGTTGGAGAAAAGCTTGGTGAAGGGTCTTTTGGTGTTGTCTATTCGGGTGTTTTGGTTCCGAAGAATGGGAATGGGAATAGTGGGAGTGTTGATTTGGTGCAGAAGAGGGGAAGAGGCAAGACAACGCAGGTGGAACCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTGGAAATTCAAGGTGCTGCGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGAGCAGCTCCCGAAACATGTGCCGACTTCCTTGGAAGTTTTGTAGCGGATAAAACAAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGGGATCGCACTCTTGCTGATTACATGAAGGATCGAAACTTTCCTTCAAACTTAGAACCTGTGATGTTTGGACGTGTTCTGCAAGGTGTTGACTCTTCAAAACGAAATGCATTGATCATCAAACAAATACTGCGCCAGATCATTACATCTCTGAGGAAAATTCATGATAATGGCATTGTTCACAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACTTGCGGATTGGAAAGAATTATATTCCCAACCGTACCCTTTTGGATCCTGACTATTGCCCCCCAGAATTATATGTACTCCCAGAAGAAACACCAAGTCCACCACCAGAACCAATTGCTGCTTTCCTTTCTCCAATCCTTTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTTCTTCAAATGGCTATTCCATCCTTGAGGTCTTCTGCTGCTTTGAAGAATTTCAACTTGGAACTAAAAAACTGTGGATATGATCTGAAAAAATGGAGGGACTATACTCGCAACAGGCCTGACTTCCAAATTCTAGATGGTGAATCTGGTAGAGGGTGGGACTTAGCTACAAGGCTTGTATCTGAGAGAGGTTCCCTACGAAGAGGACGTTTATCTGCTGCTGCAGCTCTGAGACATCCTTATTTTCTTCTGGGTGGTGATCAGGCAGCTGCAGTACTTTCAAAACTAAGCTTAAGCAGAAAGTGA 1530 0.4471 MASLLPPTPTATSTLKHSQMASSMKLTTPNNASFLQNSNHRLKSNSAKCHAVFGDVAKGLVENSVGMDQFQSIQSGIVQFERVTEGLSDMQRWAVLVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLVGRRNLKRSDFVVGEKLGEGSFGVVYSGVLVPKNGNGNSGSVDLVQKRGRGKTTQVEPKSKDKVILKKVKVEIQGAAEFGDYEEWFNYRLSRAAPETCADFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLEPVMFGRVLQGVDSSKRNALIIKQILRQIITSLRKIHDNGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYIPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSSAALKNFNLELKNCGYDLKKWRDYTRNRPDFQILDGESGRGWDLATRLVSERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01556 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Vian9g01556 509 SMART serkin_6 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01556 509 Pfam Protein kinase domain 297 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01556 509 Gene3D Transferase(Phosphotransferase) domain 1 288 492 - -
Vian9g01556 509 ProSiteProfiles Protein kinase domain profile. 143 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01556 509 SUPERFAMILY Protein kinase-like (PK-like) 139 491 IPR011009 -
Vian9g01556 509 Gene3D Phosphorylase Kinase; domain 1 131 257 - -
Vian9g01556 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 42 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01556 Vian-Chr9 31872536 31874900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01556 167 344 MAP Kinase Kinase Gene Family AT4G29810 26.257 2.69e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vian9g01556 Pkinase 2.9e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01556 - - gmx:100788727 800.045